View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2009_low_8 (Length: 296)
Name: NF2009_low_8
Description: NF2009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2009_low_8 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 38818658 - 38818925
Alignment:
| Q |
1 |
caagtgttccagaaggcactcctctttttcaagaggattcgcggcatgtcaagccttggtaaggttcttcgctttgcatcgaattaaaccacatgctcca |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38818658 |
caagtgttcccgaaggcactcctctttttcaagaggattcgcggcatgtcaagccttggtaaggttcttcgctttgcatcgaattaaaccacatgctcca |
38818757 |
T |
|
| Q |
101 |
tcgcttatgcgggcccccgtcaattcctttgagtttcattcttgcgaacgtactccccaggcgggatacttaacgcgttagctacaacattgcacgggat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38818758 |
tcgcttatgcgggcccccgtcaattcctttgagtttcattcttgcggacgtactccccaggtgggatacttaacgcgttagctacaacattgcacgggat |
38818857 |
T |
|
| Q |
201 |
gatacgcacaaccgcctagtatccatcgtttacggctaggactactggggtctctaatcccattcgct |
268 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38818858 |
gatacgcacagccgcctagtatccatcgtttacggctaggactactggggtctctaatcccattcgct |
38818925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 17934031 - 17933927
Alignment:
| Q |
164 |
ggatacttaacgcgttagctacaacattgcacgggatgatacgcacaaccgcctagtatccatcgtttacggctaggactactggggtctctaatcccat |
263 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17934031 |
ggatacttaacgcgttagctacagcattgcacgggtcgatacgcacagccgcctagtatccatcgtttacggctaggactactggggtctcgaatcccat |
17933932 |
T |
|
| Q |
264 |
tcgct |
268 |
Q |
| |
|
||||| |
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|
| T |
17933931 |
tcgct |
17933927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 268
Target Start/End: Original strand, 13224293 - 13224555
Alignment:
| Q |
6 |
gttccagaaggcactcctctttttcaagaggattcgcggcatgtcaagccttggtaaggttcttcgctttgcatcgaattaaaccacatgctccatcgct |
105 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13224293 |
gttcccgaaggcactcctctctttcaagaggattcgcggcatgtcaagccctggtaaggttcttcgctttgcatcgaattaaaccacatgctccaccgct |
13224392 |
T |
|
| Q |
106 |
tatgcgggcccccgtcaattcctttgagtttcattcttgcgaacgtactccccaggcgggatacttaacgcgttagctacaacattgcacgggatgatac |
205 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
13224393 |
tgtgcgggcccccgtcaattcctttgagtttcattcttgcgaacgtactccccaggcgggatacttaacgcgttagctacagcattgcacgggtcgatac |
13224492 |
T |
|
| Q |
206 |
gcacaaccgcctagtatccatcgtttacggctaggactactggggtctctaatcccattcgct |
268 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13224493 |
gcacagccacctagtatccatcgtttacggctaggactactggggtctctaatcccattcgct |
13224555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 3920555 - 3920600
Alignment:
| Q |
114 |
cccccgtcaattcctttgagtttcattcttgcgaacgtactcccca |
159 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
3920555 |
cccctgtcaattcctttgagtttcattcttgcaaacttactcccca |
3920600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 8967289 - 8967245
Alignment:
| Q |
4 |
gtgttccagaaggcactcctctttttcaagaggattcgcggcatg |
48 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |||||| |
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| T |
8967289 |
gtgttcccgaaggcactcctctctttcaagaggattcgtggcatg |
8967245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 268
Target Start/End: Original strand, 187726 - 187988
Alignment:
| Q |
6 |
gttccagaaggcactcctctttttcaagaggattcgcggcatgtcaagccttggtaaggttcttcgctttgcatcgaattaaaccacatgctccatcgct |
105 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
187726 |
gttcccgagggcacccctctctttcaagaggattcgcggcatgtcaagccctggtaaggttcttcgctttgcatcgaattaaaccacatgctccaccgct |
187825 |
T |
|
| Q |
106 |
tatgcgggcccccgtcaattcctttgagtttcattcttgcgaacgtactccccaggcgggatacttaacgcgttagctacaacattgcacgggatgatac |
205 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
187826 |
tgtgcgggcccccgtcaattcctttgagtttcattcttgcgaacgtactccccaggcgggatacttaacgcgttagctacagcattgcacgggtcgatac |
187925 |
T |
|
| Q |
206 |
gcacaaccgcctagtatccatcgtttacggctaggactactggggtctctaatcccattcgct |
268 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
187926 |
gcacagccacctagtatccatcgtttacggctaggactactggggtctctaatcccattcgct |
187988 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 15005796 - 15006060
Alignment:
| Q |
4 |
gtgttccagaaggcactcctctttttcaagaggattcgcggcatgtcaagccttggtaaggttcttcgctttgcatcgaattaaaccacatgctccatcg |
103 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15005796 |
gtgttcccgaaggcactcctctctttcaagaggattcacggcatgtcaagccctggtaaggttcttcgctttgcatcgaattaaaccacatgctccaccg |
15005895 |
T |
|
| Q |
104 |
cttatgcgggcccccgtcaattcctttgagtttcattcttgcgaacgtactccccaggcgggatacttaacgcgttagctacaacattgcacgggatgat |
203 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| ||| ||| |
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|
| T |
15005896 |
cttttgcggggccccgtcaattcctttgagtttcattcttgcgaacgtactccccaggagggatacttaacgtgttagctacagtattgcatgggtcgat |
15005995 |
T |
|
| Q |
204 |
acgcacaaccgcctagtatccatcgtttacggctaggactactggggtctctaatcccattcgct |
268 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15005996 |
acacacagccgcctagtatccatcgtttacggctaggactactagggtctctaatcccattcgct |
15006060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 77 - 268
Target Start/End: Original strand, 14464876 - 14465067
Alignment:
| Q |
77 |
catcgaattaaaccacatgctccatcgcttatgcgggcccccgtcaattcctttgagtttcattcttgcgaacgtactccccaggcgggatacttaacgc |
176 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14464876 |
catcaaattaaaccacatgctccaccgcttgtgcgggcccccgtcaaatcctttgagtttcattcttgcgaacgaactccccaggcgggatacttaacgc |
14464975 |
T |
|
| Q |
177 |
gttagctacaacattgcacgggatgatacgcacaaccgcctagtatccatcgtttacggctaggactactggggtctctaatcccattcgct |
268 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14464976 |
gttagctacaacattgcacgggtcgatacgcacaaccacctagtatccatcgtttacggctaggactactggggtctctaatcccattcgct |
14465067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 489882 - 489751
Alignment:
| Q |
6 |
gttccagaaggcactcctctttttcaagaggattcgcggcatgtcaagccttggtaaggttcttcgctttgcatcgaattaaaccacatgctccatcgct |
105 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
489882 |
gttcccgaaggcactcctctctttcaagaggattcgcggcatgtcaagccctggtaaggttcttcgctttgcatcgaattaaaccacatgctccaccgct |
489783 |
T |
|
| Q |
106 |
tatgcgggcccccgtcaattcctttgagtttc |
137 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
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|
| T |
489782 |
tgtgcgggcccccgtcaattcctttgagtttc |
489751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 20222294 - 20222426
Alignment:
| Q |
139 |
ttcttgcgaacgtactccccaggcgggatacttaacgcgttagctacaacattgcacgggatgatacgcacaaccgcctagtatccatcgtttacggcta |
238 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||||||| | ||||||||||||| |||||||||| |||||| |||||||| |||| ||||| |
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|
| T |
20222294 |
ttcttgcgaatgtactccccaggcgggatgcttagtgcgttagcaataacattgcacgggtcgatacgcacagccgcctggtatccattgtttggggcta |
20222393 |
T |
|
| Q |
239 |
gg---actactggggtctctaatcccattcgct |
268 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
20222394 |
ggtgtactactggggtctctaatcccattcgct |
20222426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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