View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20100_high_1 (Length: 811)

Name: NF20100_high_1
Description: NF20100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20100_high_1
NF20100_high_1
[»] chr5 (1 HSPs)
chr5 (18-802)||(43410439-43411247)


Alignment Details
Target: chr5 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 18 - 802
Target Start/End: Original strand, 43410439 - 43411247
Alignment:
Q  18 agaaaaccctacaggagctcctttaggagttgatcatgccttcatgcatgcatctaatattaatatccaggactaccatcagcagctgcaggaggatctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  43410439 agaaaaccctacaggagctcctttaggagttgatcatgccttcatgcatgcatctaatattaatatccaggactaccatcagc---tgcaggaggatctt 43410535  T
Q  118 gatactaagcaattactgctacatttcaacaacaacaataatcaaatcctacctccaagaccaactgtggcctggaacaacaacaattcttcatcatcaa 217  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410536 gatactaagcaattactgctacatttcaac---aacaataatcaaatcctacctccaagaccaactgtggcctggaacaacaacaattcttcatcatcaa 43410632  T
Q  218 cactcctagaaaggggtgctttcagagtgaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410633 cactcctagaaaggggtgctttcagagtgaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagct 43410732  T
Q  318 tgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410733 tgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgat 43410832  T
Q  418 cttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgca 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410833 cttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgca 43410932  T
Q  518 acagcagcagcagcagtccatcctc----ctagctagcttacaacttc---tcatctgaatgtgttg------------tgtctgtctgtatattgtata 598  Q
    |||||||||||||||||||||||||    |||||||||||||||||||   ||||||||||||||||            |||||||||||||||||||||    
T  43410933 acagcagcagcagcagtccatcctcctagctagctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgtctgtctgtctgtatattgtata 43411032  T
Q  599 gcatccaaattcccaagcaaacataacatcaatgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattt 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43411033 gcatccaaattcccaagcaaacataacatcaatgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattt 43411132  T
Q  699 tgttaattacacatcatattgtttaattagagttttagttaacaaagcatcataccaaa-----------catgtagtcttcgtgattacataaactatt 787  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||           ||||||||||| ||||||||||||||||||    
T  43411133 tgttaattacacatcttgttgtttaattagagttttagttaacaaagcatcataccaaactgttacttctcatgtagtctttgtgattacataaactatt 43411232  T
Q  788 ttgttcatctcactc 802  Q
    |||||||||||||||    
T  43411233 ttgttcatctcactc 43411247  T

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