View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20100_high_4 (Length: 325)
Name: NF20100_high_4
Description: NF20100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20100_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 34408816 - 34408512
Alignment:
| Q |
16 |
aacaatgtgatgtaaccaattacaacttattcaaaggtctagtagctagcttgtgttctggtgtgtcttttcttttgtaattacaatttatccataagta |
115 |
Q |
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| T |
34408816 |
aacaatgtgatgtaaccaattacaacttattcaaaggtctagtagctagcttgtgttctggtgtgtcttttcttttgtaattacaatttatccataagta |
34408717 |
T |
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| Q |
116 |
ctgtcataagttaccacaaagtgtggagattatatggaggttgagcattactataaatagaactttattaatccacaagtgataacacgatctacttttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408716 |
ctgtcataagttaccacaaagtgtggagattatatggaggttgagcattactataaatagaactttattaatccacaagtgataacacgatctacttttt |
34408617 |
T |
|
| Q |
216 |
cgctaaacatcactcggtcaactacatttagttagttattacagttagtaacaattatacgggagaaacgtatgcttcggacttgattataattatattc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
34408616 |
cgctaaacatcactcggtcaactacatttagttagttattacagttagtaacaattatacgggagaaacttatgcttcggacttagttataattatatta |
34408517 |
T |
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| Q |
316 |
ttcga |
320 |
Q |
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||||| |
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| T |
34408516 |
ttcga |
34408512 |
T |
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