View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20100_high_5 (Length: 319)
Name: NF20100_high_5
Description: NF20100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20100_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 33383443 - 33383143
Alignment:
| Q |
1 |
ggtatttctatgaagggtaattttttctatgataatagctactttaaacaagtcatctgagcannnnnnnnncaatgataatagcaacttcagaacttca |
100 |
Q |
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| T |
33383443 |
ggtatttctatgaagggtaattttttctatgataatagctactttaaactagtcatctgagcatttttttc-ctatgataatagcaacttcagaacttca |
33383345 |
T |
|
| Q |
101 |
agtgataacagctacctcaatgatttgatatttgaggtagtcaggtagatacttgcaacatattttttatcaccaacttccaaaatttcatacttctttt |
200 |
Q |
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| T |
33383344 |
agtgataatagctacctcaatgatttcatatttgaggtagtcaggtagatacttgcaacatattttttatcaccaacttccaaaatttcatacttctttt |
33383245 |
T |
|
| Q |
201 |
ttagagcttctcaaacttcttaggcagactcacacacactatagtaatcatacaaatcgtcagaaaatccattaagaataaaattctattagaggtaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383244 |
ttagagcttctcaaacttcttaggcagactcacacacactatagtaatcatacaaatcgtcagaaaatccattaagaataaaattctattagaggtaatt |
33383145 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
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|| |
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| T |
33383144 |
gt |
33383143 |
T |
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