View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20100_high_7 (Length: 250)
Name: NF20100_high_7
Description: NF20100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20100_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3803049 - 3803287
Alignment:
| Q |
1 |
ttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttgaagttcgcttaacc |
100 |
Q |
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| T |
3803049 |
ttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttgaagttcacttaacc |
3803148 |
T |
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| Q |
101 |
ccttaggattaccgcttaattttccggccaggggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatcaaacacagacatggt |
200 |
Q |
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| T |
3803149 |
ccttaggattaccgcttaattttccggccaagggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatcaaacacagacatggt |
3803248 |
T |
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| Q |
201 |
tgcagctggcaagtgaaactttcgtaccttgttgttcat |
239 |
Q |
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| T |
3803249 |
tgcagctggtaagtgaaactttcgtaccttgttgttcat |
3803287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 397729 - 397497
Alignment:
| Q |
7 |
tgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattccgataactaggccaactcccattctttgaagttcgcttaaccccttag |
106 |
Q |
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|||||||||| | ||||||| ||| |||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
397729 |
tgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattccaataactaggccaactcccattctttgaagttcgcttaaccccttag |
397630 |
T |
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| Q |
107 |
gattaccgcttaattttccggccaggggaacaagaacttggcgataaagtccagtacatacaaggacactacctatatcaaacacagacatggttgcagc |
206 |
Q |
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| T |
397629 |
gattaccgcttaattttccggccaagggaactagaacttggcgataaagtccagtgcatacaaggacactgcatatatcaaacacagacatggttgctgc |
397530 |
T |
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| Q |
207 |
tggcaagtgaaactttcgtaccttgttgttcat |
239 |
Q |
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| T |
397529 |
tggcaagtgaaattttcctaccttgttgttcat |
397497 |
T |
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