View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20100_low_10 (Length: 236)
Name: NF20100_low_10
Description: NF20100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20100_low_10 |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 3802762 - 3802983
Alignment:
| Q |
15 |
agaaaaaccaatccatgtgcccatcattcaagttattcggtatccatcccggttcttcgcctttagcagtgattttcatcacggatttcaccatcatgct |
114 |
Q |
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| T |
3802762 |
agaaaaaccaatccatgtgcccatcattcaagttattcggtatccatcccagttcttcgcctttagtagtgattttcatcacggatttcaccatcatgct |
3802861 |
T |
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| Q |
115 |
gctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaactgaccc |
214 |
Q |
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| T |
3802862 |
gctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaactgaccc |
3802961 |
T |
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| Q |
215 |
acatacacaaaaacttctgaag |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
3802962 |
acatacacaaaaacttctgaag |
3802983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 398022 - 397801
Alignment:
| Q |
15 |
agaaaaaccaatccatgtgcccatcattcaagttattcggtatccatcccggttcttcgcctttagcagtgattttcatcacggatttcaccatcatgct |
114 |
Q |
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| T |
398022 |
agaaaaacctgtccatgtgcccaacatttaagttattcggaatccatccaggttcctcgcctctagcagtgaatatcatcaccaatttcaccatcatgct |
397923 |
T |
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| Q |
115 |
gctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaactgaccc |
214 |
Q |
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| T |
397922 |
gctaacatagtttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgaccc |
397823 |
T |
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| Q |
215 |
acatacacaaaaacttctgaag |
236 |
Q |
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| T |
397822 |
acatacataaaaacttctgaag |
397801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 2745903 - 2745785
Alignment:
| Q |
116 |
ctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaactgaccca |
215 |
Q |
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| T |
2745903 |
ctaacatagtttcctaatgatattgaagtcatacaaagtgcacttccaaagcttttcaatccatcaggtgcctgtgaattgaaaaactccaattgaccaa |
2745804 |
T |
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| Q |
216 |
catacacaaaaacttctga |
234 |
Q |
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| T |
2745803 |
catacatgaaaacttctga |
2745785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 52809497 - 52809624
Alignment:
| Q |
109 |
catgctgctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaac |
208 |
Q |
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| T |
52809497 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaat |
52809596 |
T |
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| Q |
209 |
tgacccacatacacaaaaacttctgaag |
236 |
Q |
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| T |
52809597 |
tgacccacatacatgaaaacctctgaag |
52809624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 4708319 - 4708421
Alignment:
| Q |
119 |
acatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaactgacccacat |
218 |
Q |
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|||||||| ||||| ||||| || | ||| ||||||| |||||| || || |||| |||||| || | |||| ||||||||||||| ||||| || |||| |
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| T |
4708319 |
acatagttgccaagggaaatggatgtcatgcaaagtgcacttccgaaactctttaagccatcaggtgtttgagcattgaagaactctaactgccctacat |
4708418 |
T |
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| Q |
219 |
aca |
221 |
Q |
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||| |
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| T |
4708419 |
aca |
4708421 |
T |
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