View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20100_low_11 (Length: 223)

Name: NF20100_low_11
Description: NF20100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20100_low_11
NF20100_low_11
[»] chr1 (3 HSPs)
chr1 (19-205)||(14889203-14889388)
chr1 (29-124)||(14883588-14883685)
chr1 (156-205)||(14883688-14883737)
[»] chr7 (7 HSPs)
chr7 (41-205)||(27243691-27243861)
chr7 (28-124)||(27249715-27249811)
chr7 (36-102)||(27323492-27323564)
chr7 (139-190)||(27249642-27249692)
chr7 (28-62)||(27314231-27314265)
chr7 (69-101)||(27236731-27236763)
chr7 (29-69)||(27302232-27302272)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 14889203 - 14889388
Alignment:
Q  19 tgaaacatggaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagttacaagttacaaccagagaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14889203 tgaaacatggaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagttacaagttacaaccagagaaa 14889302  T
Q  119 ttaagcatcnnnnnnnnnnataagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaactaattattactttat 205  Q
    |||||||||          |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  14889303 ttaagcatc-tttttttttataagagtaaagtcatcctctttattctgtcgatattggttattaccgaaaaccaattattactttat 14889388  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 14883588 - 14883685
Alignment:
Q  29 aatattttgatctgaaacatttcagattttattttaattata--tatagtgatccctagtggggattcagttacaagttacaaccagagaaattaagc 124  Q
    |||||||||||||||||||||||| |||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||   |||||||||||    
T  14883588 aatattttgatctgaaacatttcaaattttatttttattatatatatagtgatccctagtggggattcagttacaacttacaactgaagaaattaagc 14883685  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 14883688 - 14883737
Alignment:
Q  156 tctttattctgtcggtattggttattaccaaaaactaattattactttat 205  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14883688 tctttattctgtcggtattggttattaccaaaaaccaattattactttat 14883737  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 27243861 - 27243691
Alignment:
Q  41 tgaaacatttcagattttatttta-----attatatatagtgatccctagtggggattcagttacaagttacaaccagagaaattaag-catcnnnnnnn 134  Q
    |||||||||||||||||||||| |     ||||||||| |||||||||||||||||||||||||||| ||| |||| |||| |||||| ||             
T  27243861 tgaaacatttcagattttatttaaggaaaattatatattgtgatccctagtggggattcagttacaacttataaccggagagattaagccaaactttgtt 27243762  T
Q  135 nnnataagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaactaattattactttat 205  Q
        |||||||||| || ||| ||||| |||| |||||||||||||||||| |||| ||||||||||||||    
T  27243761 tttttaagagtaaaatcttcccctttactctgccggtattggttattaccataaaccaattattactttat 27243691  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 27249811 - 27249715
Alignment:
Q  28 gaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagttacaagttacaaccagagaaattaagc 124  Q
    |||||||| ||||||||| |||| || ||| | |||||||||| | |||||||| |||||||||||||||||||| ||||||||  |||||||||||    
T  27249811 gaatatttcgatctgaaaaatttaaggtttaaatttaattatacacagtgatccatagtggggattcagttacaacttacaaccgtagaaattaagc 27249715  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 27323564 - 27323492
Alignment:
Q  36 tgatctgaaacatttcagattttattttaattata-------tatagtgatccctagtggggattcagttacaa 102  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||    
T  27323564 tgatctgaaacatttcagattttattttaattatatgaatagtatagtgatccctagt-gggattcagttacaa 27323492  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 27249692 - 27249642
Alignment:
Q  139 taagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaac 190  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| ||||    
T  27249692 taagagtaaagtcatcc-ctttattctgtctgtattggttattaccacaaac 27249642  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 27314265 - 27314231
Alignment:
Q  28 gaatattttgatctgaaacatttcagattttattt 62  Q
    ||||||||||| |||||||||||||||||||||||    
T  27314265 gaatattttgacctgaaacatttcagattttattt 27314231  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 27236763 - 27236731
Alignment:
Q  69 tatatagtgatccctagtggggattcagttaca 101  Q
    |||||||||||||||||||||||| ||||||||    
T  27236763 tatatagtgatccctagtggggatccagttaca 27236731  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 27302272 - 27302232
Alignment:
Q  29 aatattttgatctgaaacatttcagattttattttaattat 69  Q
    ||||||||||  ||||| |||||||||||||||||||||||    
T  27302272 aatattttgaaatgaaatatttcagattttattttaattat 27302232  T

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