View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20100_low_2 (Length: 640)

Name: NF20100_low_2
Description: NF20100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20100_low_2
NF20100_low_2
[»] chr5 (1 HSPs)
chr5 (20-631)||(43410606-43411247)


Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 20 - 631
Target Start/End: Original strand, 43410606 - 43411247
Alignment:
Q  20 ggaacaacaacaattcttcatcatcaacactcctagaaaggggtgctttcagagtgaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410606 ggaacaacaacaattcttcatcatcaacactcctagaaaggggtgctttcagagtgaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagc 43410705  T
Q  120 aatgtggggatttagagatttgcagcttgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410706 aatgtggggatttagagatttgcagcttgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaa 43410805  T
Q  220 tgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttccc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410806 tgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttccc 43410905  T
Q  320 ctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctc----ctagctagcttacaacttc---tcatctgaatgtgttg------ 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||   ||||||||||||||||          
T  43410906 ctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagctagctagcttacaacttctgatcatctgaatgtgttgtgtctg 43411005  T
Q  407 ------tgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgttagctcatatacctttactgcttttcatttaattactc 500  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43411006 tctgtctgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgttagctcatatacctttactgcttttcatttaattactc 43411105  T
Q  501 gttaagttagattctgcggctttattttgttaattacacatcatattgtttaattagagttttagttaacaaagcatcataccaaa-----------cat 589  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||           |||    
T  43411106 gttaagttagattctgcggctttattttgttaattacacatcttgttgtttaattagagttttagttaacaaagcatcataccaaactgttacttctcat 43411205  T
Q  590 gtagtcttcgtgattacataaactattttgttcatctcactc 631  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  43411206 gtagtctttgtgattacataaactattttgttcatctcactc 43411247  T

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