View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20100_low_3 (Length: 328)
Name: NF20100_low_3
Description: NF20100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20100_low_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 14889129 - 14889225
Alignment:
| Q |
232 |
ggtacaagcactatagtaatatttactgtaaaatgtaactagttcaattcaatgtaagaattaatagagtgatctgaaacatggaatattttgatct |
328 |
Q |
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| T |
14889129 |
ggtacaagcactatagtaatatttactgtaaaatgtaactagttcaattcaatgtaagaattaatagagtgatctgaaacatggaatattttgatct |
14889225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 14888822 - 14888875
Alignment:
| Q |
12 |
aaaggactatagaacaatgggaaaagactctcaaaatcaaaaggaataatgaaa |
65 |
Q |
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| T |
14888822 |
aaaggaatatagaacaatgggaaaagactctcaaaatcaaaaggaataatgaaa |
14888875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 14883514 - 14883554
Alignment:
| Q |
260 |
taaaatgtaactagttcaattcaatgtaagaattaatagag |
300 |
Q |
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| T |
14883514 |
taaaatgaaactaattcaattcaatgtaagaattaagagag |
14883554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 27272764 - 27272709
Alignment:
| Q |
239 |
gcactatagtaatatttactgtaaaatgtaactagttcaattcaatgtaagaatta |
294 |
Q |
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| T |
27272764 |
gcactacagtgataattactgtaaaatgtaactaattcaattcaatgtaagaatta |
27272709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 27282490 - 27282449
Alignment:
| Q |
259 |
gtaaaatgtaactagttcaattcaatgtaagaattaatagag |
300 |
Q |
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| T |
27282490 |
gtaaaatgtaactaattcaattcaatgtaagaattaagagag |
27282449 |
T |
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