View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20101_low_2 (Length: 496)
Name: NF20101_low_2
Description: NF20101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20101_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 193 - 488
Target Start/End: Complemental strand, 35047444 - 35047151
Alignment:
| Q |
193 |
attctcatgtttactaattgctcacatttgagcaggttaaggtaaaaccatcaaccagcctgtttgcaatggcggttggaataaagcagaaagatttagt |
292 |
Q |
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| T |
35047444 |
attctcatgtttactaattgctcacatttgagcaggttaaggtaaagccatcaaccagcctgtttgcaatggcggttggaataaagcagaaagatttagt |
35047345 |
T |
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| Q |
293 |
tgacaagatggtcaaaaaggtcctttaatgagttttttgtccaaatttctcattactaatactctgtttaatccgtggatcatgaccctctttctacacc |
392 |
Q |
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| T |
35047344 |
tgacaagatggtcaaaaaggtccttcaatgagtttt--gtccaaatttctcattactaatactctgtttaatccgtggatcatgaccctctttctacacc |
35047247 |
T |
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| Q |
393 |
aaattgcagtttctagcaagtaatttcactgtcacgcttttccattatgatggaaatgtcgacgaatggaagaaattcaaatggaatgatgatgtc |
488 |
Q |
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| T |
35047246 |
aaattgcagtttctagcaagtaatttcactgtcacgcttttccattatgatggaaatgtcgacgaatggaagaaattcaaatggaatgatgatgtc |
35047151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 35047585 - 35047440
Alignment:
| Q |
1 |
tatttatgtatctgcaattgaggtcgctcgaccgactgtttctttgcagtttcaaagattgcgacatgaccgtatttaaaatcttcatcactataacata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047585 |
tatttatgtatctgcaattgaggtcgctcgaccgactgtttctttgcagtttcaaagattgcgacatgaccgtatttaaaatcttcatcactataacata |
35047486 |
T |
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| Q |
101 |
tggttgcagattcaactattactttgattcgttcaattaacattct |
146 |
Q |
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| T |
35047485 |
tggttgcagtttcaactattacattgattcgttcaattaacattct |
35047440 |
T |
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