View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20101_low_3 (Length: 475)
Name: NF20101_low_3
Description: NF20101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20101_low_3 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 5770654 - 5771113
Alignment:
| Q |
18 |
gacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagtgctattaacatgaactttgaaccctgctaatattta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770654 |
gacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggaccaattagtgctattaacatgaactttgaaccctgctaatatttt |
5770753 |
T |
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| Q |
118 |
ttctatctccctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagcctctgcatannnn |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5770754 |
ttctatctccctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagtctctgcatatttt |
5770853 |
T |
|
| Q |
218 |
nnnaaaaagagtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaatttatgtacataattacagaacatatggtaaaag |
317 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
5770854 |
tttaaaaagagtaagaaagaaagatacatcatacatcagtaacttttatgcacagtttaaccccaatttgtgtacataattacagaacatgtggtaaaag |
5770953 |
T |
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| Q |
318 |
agat--nnnnnnnnnncattcaaattatcaaaagagacagaaagatacatcatgcatcagccttttttagggagtacatgagcaactttatgttatttat |
415 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5770954 |
agataaaaaaaaaaaactttcaaattatcaaaagagacagaaagatacatcatgcatcagccttttctagggagtacatgagcaactttatgttatttat |
5771053 |
T |
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| Q |
416 |
gatgcagcaaggttattatttcaatgccaatgaaccaaaatactacactatactcataat |
475 |
Q |
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| T |
5771054 |
gatgcagcaaggttattatttcaatgccaatgaaccaaaatactacactatactcataat |
5771113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 33867395 - 33866939
Alignment:
| Q |
18 |
gacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagtgctattaacatgaactttgaaccctgctaatattta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867395 |
gacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggaccaattagtgctattaacatgaactttgaaccctgctaatattta |
33867296 |
T |
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| Q |
118 |
ttctatctccctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagcctctgcatannnn |
217 |
Q |
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| T |
33867295 |
ttctatctccctcctaaaagcaatgaaaacaaatggatcaggcatgcgttgatgtataaacaggaaaacaaatgaaccacaattagactctgcatatttt |
33867196 |
T |
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| Q |
218 |
nnnaaaaagagtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaatttatgtacataattacagaacatatggtaaaag |
317 |
Q |
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| T |
33867195 |
tttaaaaagagtaagaaagaaagatacatcatacatcagtaacttttatgcacagtttaacaccaatttgtgtacataattacagaacatatggtaaaag |
33867096 |
T |
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| Q |
318 |
agatnnnnnnnnnncattcaaattatcaaaagagacagaaagatacatcatgcatcagccttttttagggagtacatgagcaactttatgttatttatga |
417 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33867095 |
agat-aaaaaaaaactttcaaattatcaaaagagacagaaagatacatcatgcatcagccttttctagggagtacatgagcaactttatgttatttatga |
33866997 |
T |
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| Q |
418 |
tgcagcaaggttattatttcaatgccaatgaaccaaaatactacactatactcataat |
475 |
Q |
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| T |
33866996 |
tgcagcaagattattatttcaatgccaatgaaccaaaatactacactatactcataat |
33866939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 43904725 - 43904661
Alignment:
| Q |
17 |
agacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagt |
81 |
Q |
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| T |
43904725 |
agactacaaaccaagtcaactttacaacattaccatactcaaatatgcaaaatggaccaattagt |
43904661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 391 - 467
Target Start/End: Original strand, 5894390 - 5894466
Alignment:
| Q |
391 |
acatgagcaactttatgttatttatgatgcagcaaggttattatttcaatgccaatgaaccaaaatactacactata |
467 |
Q |
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| T |
5894390 |
acatgagcaagtttatgttatttatgatggagcaaggttattatctcaatgccaatgaaccaaaatactacactata |
5894466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 225 - 400
Target Start/End: Original strand, 5894049 - 5894221
Alignment:
| Q |
225 |
agagtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaatttatgtacataattacagaacatatggtaaaagagatnnn |
324 |
Q |
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||||||| ||||||||||| | ||||| || | |||||||||||||| ||||||| ||||| ||| |||||||||| ||||| ||||||||||||| |
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| T |
5894049 |
agagtaaaaaagaaagatacagcatacgtcagcaacttttatgcacaaattaaccctaatttgtgtgcataattacaaaacatgtggtaaaagagataca |
5894148 |
T |
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| Q |
325 |
nnnnnnncattcaaattatcaaaagagacagaaagatacatcatgcatcagccttttttagggagtacatgagcaa |
400 |
Q |
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||| ||||||||||||||||||||||||||||||| |||| ||||| ||| || ||||||||||| |
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| T |
5894149 |
aagagt---ttccaattatcaaaagagacagaaagatacatcataattcagacttttctagtgaatacatgagcaa |
5894221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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