View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20101_low_4 (Length: 446)
Name: NF20101_low_4
Description: NF20101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20101_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 22 - 441
Target Start/End: Original strand, 14741814 - 14742232
Alignment:
| Q |
22 |
atgagagcgtaagcgtgtcgatgatatcaaaatctattaaactcctaccatgtagcactattttggcaatttgaacatgagactacaaaaatgaaaataa |
121 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741814 |
atgagagcataagcgtgtcgatgatatcaaaatctattaaactcctaccatgtagcactattttggcaatttgaacatgagactacaaaaatgaaaataa |
14741913 |
T |
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| Q |
122 |
tgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741914 |
tgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaat |
14742013 |
T |
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| Q |
222 |
gcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtact |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14742014 |
gcataagttaatcttctgatatatttcttatgataaccatac-aatattaaatttgaacacaactttgcaaaataaaaatgatgaaccaacctcagtact |
14742112 |
T |
|
| Q |
322 |
taattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagca |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14742113 |
taattctctagtcttgtttgcataagtggcttctagagcaagcttattactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagca |
14742212 |
T |
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| Q |
422 |
ttctcccagcctttgcttct |
441 |
Q |
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||||||| ||||||| |||| |
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| T |
14742213 |
ttctccctgcctttgtttct |
14742232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 93 - 384
Target Start/End: Original strand, 14734910 - 14735200
Alignment:
| Q |
93 |
tgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaaca |
192 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
14734910 |
tgaacatgagaccacaaaaatgaaaataatgggtgattctttgacgaacctgtactgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatc |
14735009 |
T |
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| Q |
193 |
ttggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaa |
292 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |
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| T |
14735010 |
ttggacaagtagagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatac-aatataaaatttaaacacaactctgcaa |
14735108 |
T |
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| Q |
293 |
aataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatg |
384 |
Q |
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| T |
14735109 |
aacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcaattgcttatg |
14735200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 14998620 - 14998525
Alignment:
| Q |
125 |
gtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaa |
220 |
Q |
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|||||| |||||| |||||||||| |||||| | |||||||||||||| |||||||| | |||| || |||||||| | |||||||| ||||| |
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| T |
14998620 |
gtgattttttcacaaacctgcactttgcaattgcttttgttttgagacttgtcaaagccatatcaatcttagacagctggaacaacaaaagttaaa |
14998525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 140 - 370
Target Start/End: Complemental strand, 29467453 - 29467226
Alignment:
| Q |
140 |
acctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctg |
239 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||| | ||||| || |||||||| | |||||||| ||||||||| || |||| | |||| |
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| T |
29467453 |
acctgcactgtgaaatcgctgttgttttgagacttctcaaagccatatcaaccttagacagctggaacaacaaaagttaaatgcacaaattaaccgtctg |
29467354 |
T |
|
| Q |
240 |
atatatttcttatgataaccatacaaatatta-aatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgt |
338 |
Q |
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| ||| ||||| | | ||||| | |||| | |||||||||| || || || |||||| |||||||||||||||| |||||||| |||||| | | |
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| T |
29467353 |
aaatacttcttccaagtaacatac-atcattagattttaaacacagctctg---aaaaaaaataatgaaccaacctcagtgcttaattccctagtcatat |
29467258 |
T |
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| Q |
339 |
ttgcataagtggcttctagagcaagcttttta |
370 |
Q |
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| |||||||| |||||| |||||||| ||||| |
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| T |
29467257 |
tggcataagttgcttcttgagcaagcctttta |
29467226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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