View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20101_low_5 (Length: 418)

Name: NF20101_low_5
Description: NF20101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20101_low_5
NF20101_low_5
[»] chr7 (3 HSPs)
chr7 (15-395)||(45621378-45621755)
chr7 (68-114)||(45623318-45623364)
chr7 (70-114)||(10209939-10209983)
[»] chr3 (6 HSPs)
chr3 (71-395)||(15214619-15214940)
chr3 (71-395)||(15253838-15254159)
chr3 (242-379)||(7043544-7043681)
chr3 (71-158)||(7043334-7043421)
chr3 (70-114)||(23217929-23217974)
chr3 (68-114)||(18983758-18983805)
[»] chr8 (5 HSPs)
chr8 (122-395)||(22603007-22603276)
chr8 (68-149)||(29781131-29781212)
chr8 (69-112)||(510296-510339)
chr8 (68-112)||(23124864-23124908)
chr8 (68-114)||(29642451-29642497)
[»] chr1 (5 HSPs)
chr1 (172-395)||(20187858-20188083)
chr1 (242-379)||(25613428-25613565)
chr1 (69-149)||(46119661-46119741)
chr1 (70-113)||(22048926-22048969)
chr1 (71-158)||(20187760-20187847)
[»] chr6 (8 HSPs)
chr6 (242-379)||(17722221-17722357)
chr6 (69-114)||(21686116-21686161)
chr6 (71-114)||(17721533-17721576)
chr6 (71-114)||(23158117-23158160)
chr6 (71-113)||(19000466-19000508)
chr6 (69-114)||(18763100-18763145)
chr6 (69-113)||(20879072-20879116)
chr6 (74-114)||(20014729-20014769)
[»] chr2 (4 HSPs)
chr2 (70-149)||(44923846-44923925)
chr2 (71-114)||(23463750-23463793)
chr2 (68-112)||(25423770-25423815)
chr2 (172-208)||(24056879-24056915)
[»] chr4 (4 HSPs)
chr4 (71-114)||(35579453-35579496)
chr4 (69-114)||(50380485-50380530)
chr4 (70-114)||(581741-581785)
chr4 (70-114)||(581434-581478)
[»] chr5 (6 HSPs)
chr5 (71-114)||(19832214-19832257)
chr5 (69-111)||(20670616-20670658)
chr5 (69-114)||(22542955-22543000)
chr5 (71-114)||(21116947-21116991)
chr5 (69-114)||(23196130-23196177)
chr5 (66-113)||(38930986-38931034)
[»] scaffold0164 (2 HSPs)
scaffold0164 (72-114)||(34289-34331)
scaffold0164 (71-114)||(6152-6196)
[»] scaffold0039 (1 HSPs)
scaffold0039 (69-114)||(79969-80015)
[»] scaffold0755 (1 HSPs)
scaffold0755 (71-114)||(4802-4846)
[»] scaffold0305 (1 HSPs)
scaffold0305 (71-114)||(891-935)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 45621378 - 45621755
Alignment:
Q  15 cacagatgactaactagtagtaatagtaaatgggtaatcgagataaaatgcagttaatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  45621378 cacagatgactaactagtagtaatagtaacagggtaatcgagataaaacgcagttaatctatacctattaataaaggcagtactattttttgatgtagcc 45621477  T
Q  115 nnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnnntctgttttacccactaatcacacaccaaaacataactactgtg 214  Q
           ||||||||||||||||||||||||||||||| |||||             | ||||||||||||||||||||||||||||||||||||| |||    
T  45621478 tttttttgtacatcccaaaatgcctttacttgatggcaattattaaaaaaaaata--tatgttttacccactaatcacacaccaaaacataactaccgtg 45621575  T
Q  215 tttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnn 314  Q
    ||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||          
T  45621576 tttttctttgaaaaaaatctgacttaaccactaatcacactcacaaaaacataattgctacctt-ctctttctcacagttgcagaaacaatcataaaaaa 45621674  T
Q  315 ncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttatcaaacaattattcagagaaaggccc 395  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45621675 acaactgcttccattctatttctcacaattgaatggtttagttctacacaatttattaaacaattattcagagaaaggccc 45621755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 45623318 - 45623364
Alignment:
Q  68 ttaatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||    
T  45623318 ttaatctatacctattaataaaggcaatactttcttttggtgtagcc 45623364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 10209983 - 10209939
Alignment:
Q  70 aatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||||||||||||||||| || ||||||| | |||||||||||||    
T  10209983 aatctatacctattaatatagccaatactttcttttggtgtagcc 10209939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 71 - 395
Target Start/End: Complemental strand, 15214940 - 15214619
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnn 170  Q
    |||| ||||||||||||||| |||||| ||||||||||||| ||       ||| ||||||||||||| |||||||||||||||||||                
T  15214940 atctttacctattaataaaggcaatacaattttttggtgtaacctttttttgtaaatcccaaaatgcccttacttgatggcagttattaaaaaaaaaa-- 15214843  T
Q  171 ntctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataatt 270  Q
     |||| |||||||||||||||||||||||||||||||| |||| ||||||||||       ||||||||| |||||||||||||||||||| ||||||||    
T  15214842 -tctgctttacccactaatcacacaccaaaacataactgctgtatttttctttgaaaaaaatctggcttacccactaatcacactcacaaatacataatt 15214744  T
Q  271 gctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttat 370  Q
    ||||||||||||||||||||||| ||||||||||||||       ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15214743 gctacctttctctttctcacagttgcagaaacaatcataaaaaaacaactgcttccattctatttttcacaattgaatggtttagttctacacaatttat 15214644  T
Q  371 caaacaattattcagagaaaggccc 395  Q
     |||||||| |||||||||||||||    
T  15214643 taaacaattgttcagagaaaggccc 15214619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 71 - 395
Target Start/End: Complemental strand, 15254159 - 15253838
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnn 170  Q
    |||| ||||||||||||||| |||||| ||||||||||||| ||       ||| ||||||||||||| |||||||||||||||||||                
T  15254159 atctttacctattaataaaggcaatacaattttttggtgtaacctttttttgtaaatcccaaaatgcccttacttgatggcagttattaaaaaaaaaa-- 15254062  T
Q  171 ntctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataatt 270  Q
     |||| |||||||||||||||||||||||||||||||| |||| ||||||||||       ||||||||| |||||||||||||||||||| ||||||||    
T  15254061 -tctgctttacccactaatcacacaccaaaacataactgctgtatttttctttgaaaaaaatctggcttacccactaatcacactcacaaatacataatt 15253963  T
Q  271 gctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttat 370  Q
    ||||||||||||||||||||||| ||||||||||||||       ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15253962 gctacctttctctttctcacagttgcagaaacaatcataaaaaaacaactgcttccattctatttttcacaattgaatggtttagttctacacaatttat 15253863  T
Q  371 caaacaattattcagagaaaggccc 395  Q
     |||||||| |||||||||||||||    
T  15253862 taaacaattgttcagagaaaggccc 15253838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 242 - 379
Target Start/End: Original strand, 7043544 - 7043681
Alignment:
Q  242 ccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcaca 341  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||||| | | ||||||||||| ||       ||||||||||||||||||||||||||    
T  7043544 ccactaatcacactcacaaaatcataactgttgcctttctctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctcaca 7043643  T
Q  342 attgaatggtttagttctacacaatttatcaaacaatt 379  Q
    |||| |||||||| ||||||||||||||| ||||||||    
T  7043644 attgcatggtttacttctacacaatttattaaacaatt 7043681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 7043334 - 7043421
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttatt 158  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |       ||| ||||||||||| | |||||| |||| |||||||    
T  7043334 atctatacctattaataaaggcaatactatttttgggtgtagtctttttttgtaaatcccaaaatgtccttacttcatggtagttatt 7043421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 23217929 - 23217974
Alignment:
Q  70 aatctatacctattaataaagacaatac-tattttttggtgtagcc 114  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  23217929 aatctatacctattaataaagacaatactttttttttggtgtagcc 23217974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 18983758 - 18983805
Alignment:
Q  68 ttaatctatacctattaataaagacaatactatt-ttttggtgtagcc 114  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||||    
T  18983758 ttaatctatacctattaataaaggcaatacttttcttttggtgtagcc 18983805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 122 - 395
Target Start/End: Original strand, 22603007 - 22603276
Alignment:
Q  122 gtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnnntctgttttacccactaatcacacaccaaaacataactactgtgtttttct 221  Q
    ||||||||||||||||| |||||||||||||||||||             |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  22603007 gtacatcccaaaatgcccttacttgatggcagttattaaaaaaaaa----tctgctttacccactaatcacacaccaaagcataactactgtgtttttct 22603102  T
Q  222 ttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattg 321  Q
    |||       ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||       ||| ||    
T  22603103 ttgaaaaaaatctggcttacctactaatcacactcacaaaaacataattgctacctttctctttctcacagttgcataaacaatcataaaaaaacaactg 22603202  T
Q  322 cttccattctatttctcacaattgaatggtttagttctacacaatttatcaaacaattattcagagaaaggccc 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22603203 cttccattctatttctcacaattgaatggtttagttctacacaatttattaaacaattattcagagaaaggccc 22603276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 29781131 - 29781212
Alignment:
Q  68 ttaatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg 149  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||       ||| ||||||||||||| ||||||||||    
T  29781131 ttaatctatacctattaataaaggcaatactattttttggtgtagcctttttttgtaaatcccaaaatgcccttacttgatg 29781212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 510339 - 510296
Alignment:
Q  69 taatctatacctattaataaagacaatactattttttggtgtag 112  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  510339 taatctatacctattaataaaggcaatactattttttggtgtag 510296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 23124908 - 23124864
Alignment:
Q  68 ttaatctatacctattaataaagacaatactattttttggtgtag 112  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  23124908 ttaatctatacctattaataaaggcaatattattttttggtgtag 23124864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 29642497 - 29642451
Alignment:
Q  68 ttaatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||    
T  29642497 ttaatctatacctattaataaagacaatacatgtttttggtgtagcc 29642451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 172 - 395
Target Start/End: Original strand, 20187858 - 20188083
Alignment:
Q  172 tctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattg 271  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||| || |||||||||||||||||||||||||||    
T  20187858 tctgctttacccactaatcacacaccaaaacataactgctgtgtttttctttgaaaaaaatctggcttaccccctaatcacactcacaaaaacataattg 20187957  T
Q  272 ctacctttctctttctcacagtagcagaaacaatc--atnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaattta 369  Q
    |||| ||||||||||||| ||| ||||||||||||  ||       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20187958 ctacgtttctctttctcatagttgcagaaacaatcatataaaaaaacaattgcttccattctatttctcacaattaaatggtttagttctacacaattta 20188057  T
Q  370 tcaaacaattattcagagaaaggccc 395  Q
    | |||||||| ||||||||| |||||    
T  20188058 ttaaacaattgttcagagaagggccc 20188083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 379
Target Start/End: Original strand, 25613428 - 25613565
Alignment:
Q  242 ccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcaca 341  Q
    ||||||||||||||||  ||| ||||| |||| ||||||||||||||| | | ||||||||||| ||       ||||||||||||||||||||||||||    
T  25613428 ccactaatcacactcaagaaatcataactgctgcctttctctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctcaca 25613527  T
Q  342 attgaatggtttagttctacacaatttatcaaacaatt 379  Q
    |||  |||||||| ||||||||||||||| ||||||||    
T  25613528 atttcatggtttacttctacacaatttattaaacaatt 25613565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 46119661 - 46119741
Alignment:
Q  69 taatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg 149  Q
    |||||||||||||||||||||| |||||||||||||||||||| |        ||| ||||||||||||| ||||||||||    
T  46119661 taatctatacctattaataaaggcaatactattttttggtgtaacatttttttgtaaatcccaaaatgcccttacttgatg 46119741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 22048969 - 22048926
Alignment:
Q  70 aatctatacctattaataaagacaatactattttttggtgtagc 113  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  22048969 aatctatacctattaataaaggcaatacttttttttgttgtagc 22048926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 20187760 - 20187847
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttatt 158  Q
    |||||||||||||||||||| || ||||||| | ||||||||||       ||| ||||| ||||||| ||| |||||||| ||||||    
T  20187760 atctatacctattaataaaggcagtactattatgtggtgtagcctttttttgtaaatccccaaatgcccttatttgatggccgttatt 20187847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 242 - 379
Target Start/End: Original strand, 17722221 - 17722357
Alignment:
Q  242 ccactaatcacactcacaaaaacataa--ttgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctca 339  Q
    ||||||||||||||||||||| |||||  |||||   || |||||||||| | | ||||||||||| ||       ||||||||||||||||||||||||    
T  17722221 ccactaatcacactcacaaaatcataacgttgct---ttactctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctca 17722317  T
Q  340 caattgaatggtttagttctacacaatttatcaaacaatt 379  Q
    |||||| |||||||| ||||| ||||||||| ||||||||    
T  17722318 caattgcatggtttacttctatacaatttattaaacaatt 17722357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 21686161 - 21686116
Alignment:
Q  69 taatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||    
T  21686161 taatctatacctattaataaaggcaatacttttttttggtgtagcc 21686116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 17721533 - 17721576
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||||||||||||||||||| ||||||||||||||||| |||||    
T  17721533 atctatacctattaataaaggcaatactattttttggtttagcc 17721576  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 23158117 - 23158160
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  23158117 atctatacctattaataaagacaatacttttgtttggtgtagcc 23158160  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 19000466 - 19000508
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagc 113  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  19000466 atctatacctattaataaaggcaatactatattttggtgtagc 19000508  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 18763100 - 18763145
Alignment:
Q  69 taatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||    
T  18763100 taatctatacctattaataaagacagtacttttgtttggtgtagcc 18763145  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 20879072 - 20879116
Alignment:
Q  69 taatctatacctattaataaagacaatactattttttggtgtagc 113  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||    
T  20879072 taatctatacctattaataaaggcaatatttttttttggtgtagc 20879116  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 20014729 - 20014769
Alignment:
Q  74 tatacctattaataaagacaatactattttttggtgtagcc 114  Q
    ||||||||||||||||| ||||||| || ||||||||||||    
T  20014729 tatacctattaataaaggcaatacttttgtttggtgtagcc 20014769  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 44923925 - 44923846
Alignment:
Q  70 aatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||       ||| ||||||||||||| ||| ||||||    
T  44923925 aatctatacctattaataaaggcaatactattttttggtgtagcctttttttgtaaatcccaaaatgcccttatttgatg 44923846  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 23463793 - 23463750
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||||||||||||||||||| ||||||| | |||||||||||||    
T  23463793 atctatacctattaataaaggcaatactttgttttggtgtagcc 23463750  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 25423815 - 25423770
Alignment:
Q  68 ttaatctatacctattaataaagacaatactatt-ttttggtgtag 112  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||    
T  25423815 ttaatctatacctattaataaaggcaatacttttcttttggtgtag 25423770  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 24056915 - 24056879
Alignment:
Q  172 tctgttttacccactaatcacacaccaaaacataact 208  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  24056915 tctgctttacccactaatcacacatcaaaacataact 24056879  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 35579496 - 35579453
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  35579496 atctatacctattaataaaggcaatactattttttggtgtagcc 35579453  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 50380530 - 50380485
Alignment:
Q  69 taatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||    
T  50380530 taatctatacctattaataaaggaaatacttttttttggtgtagcc 50380485  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 581741 - 581785
Alignment:
Q  70 aatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||    
T  581741 aatctatacctattaataaagacaatactttaatttggtgtagcc 581785  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 581434 - 581478
Alignment:
Q  70 aatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    ||||||||||||||||||||| ||||||| |  ||||||||||||    
T  581434 aatctatacctattaataaaggcaatactttagtttggtgtagcc 581478  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 19832214 - 19832257
Alignment:
Q  71 atctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  19832214 atctatacctattaataaaggcaatacttttttttggtgtagcc 19832257  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 20670658 - 20670616
Alignment:
Q  69 taatctatacctattaataaagacaatactattttttggtgta 111  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  20670658 taatctatacctattaataaatgcaatactattttttggtgta 20670616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 22542955 - 22543000
Alignment:
Q  69 taatctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||| ||||||||||||||||| ||||||| ||||||| |||||||    
T  22542955 taatatatacctattaataaaggcaatacttttttttgatgtagcc 22543000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 21116991 - 21116947
Alignment:
Q  71 atctatacctattaataaagacaatactatt-ttttggtgtagcc 114  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  21116991 atctatacctattaataaaggcaatacttttgttttggtgtagcc 21116947  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 23196177 - 23196130
Alignment:
Q  69 taatctatacctattaataaagacaatactattt--tttggtgtagcc 114  Q
    |||||||||||||||||||||| ||||||| |||  ||||||||||||    
T  23196177 taatctatacctattaataaaggcaatactttttggtttggtgtagcc 23196130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 38931034 - 38930986
Alignment:
Q  66 agttaatctatacctattaataaagacaatactatt-ttttggtgtagc 113  Q
    |||| |||||||||||||||||||| ||||||| || ||||||||||||    
T  38931034 agtttatctatacctattaataaaggcaatacttttcttttggtgtagc 38930986  T

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Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 34289 - 34331
Alignment:
Q  72 tctatacctattaataaagacaatactattttttggtgtagcc 114  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  34289 tctatacctattaataaagggaatactattttttggtgtagcc 34331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 6152 - 6196
Alignment:
Q  71 atctatacctattaataaagacaatactatt-ttttggtgtagcc 114  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  6152 atctatacctattaataaaggcaatacttttcttttggtgtagcc 6196  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 79969 - 80015
Alignment:
Q  69 taatctatacctattaataaagacaatactatt-ttttggtgtagcc 114  Q
    |||||||||||||||||||||| ||||||| || |||||||||||||    
T  79969 taatctatacctattaataaaggcaatacttttgttttggtgtagcc 80015  T

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Target: scaffold0755 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 4802 - 4846
Alignment:
Q  71 atctatacctattaataaagacaatactatt-ttttggtgtagcc 114  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  4802 atctatacctattaataaaggcaatacttttattttggtgtagcc 4846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 935 - 891
Alignment:
Q  71 atctatacctattaataaagacaatactatt-ttttggtgtagcc 114  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  935 atctatacctattaataaaggcaatacttttcttttggtgtagcc 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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