View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20101_low_6 (Length: 372)
Name: NF20101_low_6
Description: NF20101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20101_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 38 - 355
Target Start/End: Complemental strand, 33866924 - 33866607
Alignment:
| Q |
38 |
ttaaaccatgtaaatcaccaatttaagaaagataagaatacacaactaaattattgaagattttgtccaataacttctaattataaaaatgttacctctc |
137 |
Q |
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| T |
33866924 |
ttaaaacatgtaaatcaccaatttaagaaagataagaatacacaactaaattattaaagattttgtccaataacttctaattataaaaatgttacctctc |
33866825 |
T |
|
| Q |
138 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaacaaaaatcaaactttta |
237 |
Q |
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| T |
33866824 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaatacaaatcaaactttta |
33866725 |
T |
|
| Q |
238 |
tgattgtgcatcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactc |
337 |
Q |
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| T |
33866724 |
tgattctgcatcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactc |
33866625 |
T |
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| Q |
338 |
ctgccttcatatacccat |
355 |
Q |
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| T |
33866624 |
ctgccttcatatacccat |
33866607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 331
Target Start/End: Complemental strand, 44574089 - 44574004
Alignment:
| Q |
246 |
catcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaa |
331 |
Q |
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| T |
44574089 |
catcatcatcatgtatgtcaagatggtttaatttgagagcagcggctgtttgcgtcgtctgctcactccggctagatggaaaacaa |
44574004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 38 - 351
Target Start/End: Original strand, 5771128 - 5771441
Alignment:
| Q |
38 |
ttaaaccatgtaaatcaccaatttaagaaagataagaatacacaactaaattattgaagattttgtccaataacttctaattataaaaatgttacctctc |
137 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5771128 |
ttaaaacatgtaaatcaccaatttaagaaagataagaatacacaactaaattattaaagattttgtccaataacttctaattataaaaacgttacctctc |
5771227 |
T |
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| Q |
138 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaacaaaaatcaaactttta |
237 |
Q |
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| T |
5771228 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttgagagaagtgaactcttaagtgaaatacaaatcaaactttta |
5771327 |
T |
|
| Q |
238 |
tgattgtgcatcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactc |
337 |
Q |
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| T |
5771328 |
tgattctgcataatcatgatgtatgtcaagatggtttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctaggtggaaaacaatcactc |
5771427 |
T |
|
| Q |
338 |
ctgccttcatatac |
351 |
Q |
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|||||||||||||| |
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| T |
5771428 |
ctgccttcatatac |
5771441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 23214315 - 23214364
Alignment:
| Q |
302 |
gtctgctcgctccggctagatggaaaacaatcactcctgccttcatatac |
351 |
Q |
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| T |
23214315 |
gtctgcttgctccggctagatggaaaacaatcactcctgccttcatatac |
23214364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 5894501 - 5894561
Alignment:
| Q |
38 |
ttaaaccatgtaaatcaccaatttaagaaaga--taagaatacacaactaaattattgaag |
96 |
Q |
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| T |
5894501 |
ttaaaccgtgtatatcaccaatttaagagagagataagaatacacacctaaattattgaag |
5894561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 5894555 - 5894614
Alignment:
| Q |
138 |
attgaaggatttacctcctctatgcatgtcagcagttggtaatgcacattcttttcttga |
197 |
Q |
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| T |
5894555 |
attgaaggatttacctcctttatgttggttagcgattggtaatgcacattcttttcttga |
5894614 |
T |
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