View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20101_low_7 (Length: 364)
Name: NF20101_low_7
Description: NF20101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20101_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 42979600 - 42979430
Alignment:
| Q |
2 |
gcataggttccgggactgaattcatgggcagaaccttcagcagaagcagttggcaatccatctatggattggacatctgagcaaagagaaaagaggagga |
101 |
Q |
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| T |
42979600 |
gcataggttccgggactgaattcatgggcagaaccttcagcagaagcagttggcaatccatctatggattggacatctgagcaaagagaaaagaggagga |
42979501 |
T |
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| Q |
102 |
gaggagatgaagagtctccttctaacatgcctgtaatttcttccttgcccttaattgagttcattccttgt |
172 |
Q |
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| T |
42979500 |
gaggagatgaagagtctccttctaacatgcctgtaatttcttccttgcccttaattgagttcattccttgt |
42979430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 220 - 346
Target Start/End: Complemental strand, 42979428 - 42979302
Alignment:
| Q |
220 |
tcattctgttggatttcattatgattttcataacagtatataatgtgaataacggatgtttattcagatttgttaatttttaattacatttgtttattca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42979428 |
tcattctgttggatttcattatgattttcataacagtatataatgtgaataacggatgtttattcagatttgttaatttttaattacatttgtttattca |
42979329 |
T |
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| Q |
320 |
caggttgagggtgacgaggttgagggt |
346 |
Q |
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| T |
42979328 |
caggttgagggtgacgaggttgagggt |
42979302 |
T |
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