View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20102_high_1 (Length: 681)

Name: NF20102_high_1
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20102_high_1
NF20102_high_1
[»] chr2 (1 HSPs)
chr2 (20-669)||(28896444-28897092)


Alignment Details
Target: chr2 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 20 - 669
Target Start/End: Original strand, 28896444 - 28897092
Alignment:
Q  20 ggttgcaagtgaggttaaggcaggggatataaaggtcttgtttgtgaagccacttgtttactggactcgattttttatcatagctacagcattttctcgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28896444 ggttgcaagtgaggttaaggcaggggatataaaggtcttgtttgtgaagccacttgtttactggactcgattttttatcatagctacagcattttctcgt 28896543  T
Q  120 ccccaaattgatgctatcgggtatggaacctgtcattgatctttatatatttatttagcaatgttcannnnnnnnctttgctcaaaggatgtatatttaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||    
T  28896544 ccccaaattgatgctatcgggtatggaacctgtcattgatctttatatatttatttagcaatgttcattttttttctttcctcaaaggatgtatatttaa 28896643  T
Q  220 tcctatttatattgaattttatttaggtcaagaattagagaccgagctgaaaagaaatatggtaaaattccaaatggagacttgaaacccaactcatgga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28896644 tcctatttatattgaattttatttaggtcaagaattagagaccgagctgaaaagaaatatggtaaaattccaaatggagacttgaaacccaactcatgga 28896743  T
Q  320 ccctgttggacttcggtaagtcactttacaatacaatagagccctctaattgtctgcattttataaaaacaaatcccttgaagtttcccattgcacttgt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28896744 ccctgttggacttcggtaagtcactttacaatacaatagagccctctaattgtctgcattttataaaaacaaatcccttgaagtttcccattgcacttgt 28896843  T
Q  420 agaagaggtacattcaccaagaaagacataacttctagaaatttaacattatactctaacaaaatgcatagtcagaagcaaagatgcagggtacctcaac 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  28896844 agaagaggtacattcaccaagaaagacataacttctagaaatttaacattatactctaacaaaatgcataatcagaagcaaagatgcaggatacctcaac 28896943  T
Q  520 atgattctcccctttgtccctatcaaaaccttctaaatcaatcaacataaattgcattaaattccagttccaaaagcctatatttgacacaatcagacat 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28896944 atgattctcccctttgtccctatcaaaaccttctaaatcaatcaacataaattgcattaaattccagttccaaaagcctatatttgacacaatcagacat 28897043  T
Q  620 ctgtattgcaacatatatttgcattgaatcgtagtcatatcatgtatatt 669  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  28897044 ctgtattgcaacata-aattgcattgaatcgtagtcatatcatgtatatt 28897092  T

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