View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20102_high_2 (Length: 677)
Name: NF20102_high_2
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20102_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 19 - 642
Target Start/End: Original strand, 3652396 - 3653020
Alignment:
| Q |
19 |
ggtgaaacaataaatcaagaagatagtgaggcatggagattaagaaatgcaattaaagatactacatatctatgtggtgtttttgttatggctgatgcta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652396 |
ggtgaaacaataaatcaagaagatagtgaggcatggagattaagaaatgcaattaaagatactacatatctatgtggtgtttttgttatggctgatgcta |
3652495 |
T |
|
| Q |
119 |
ttcctagcttaagttggattgattttcaaggccatgttggttttatgaagaggactgctaaggaaatggatttcattcttgataagtggttgagtgaaca |
218 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652496 |
ttcctagcctaagttggattgattttcaaggccatgttggtttcatgaagaggactgctaaggaaatggatttcattcttgataagtggttgagtgaaca |
3652595 |
T |
|
| Q |
219 |
ttataaaaagagagatgaagtacaaagtggtaagcgtgaggatgatttcatggatgtattgatatcaatgtttgaagaagatgatgaaatttgtggccac |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652596 |
ttataaaaagagagatgaagtacaaagtggtaag---gaggatgatttcatggatgtattgatatcaatgtttgaagaagatgatgaaatttgtggccac |
3652692 |
T |
|
| Q |
319 |
aaacgggagacagttatcaaagcaacaaccttggtacgttttccttcatg-------taagtactaaaatttgaaagtaatatatgtccatcaattatcn |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
3652693 |
aaacgggagacagttatcaaagcaacaaccttggtacgtttttcttcatgcttatattaagtactaaaatttgaaagta--atatgtccatcaattatct |
3652790 |
T |
|
| Q |
412 |
nnnnnnggtggtgtccgggattcgaatctcatatcttacatatattatgtattgtccatcaactatctatcaataacaaatcatttcaagagcgaaaaca |
511 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |
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| T |
3652791 |
ttttttggtggtgtccgggattcgaatatcatatcttacatatattatgtattgtccatcaattatctatcaataataaatcatttcaagagtgaaaaca |
3652890 |
T |
|
| Q |
512 |
atttcacaagcaatttatagtatttttaaaaaccataaactaatccatagaacnnnnnnnnncttgaccgaactaatccaaagaattgaaaaccgtacaa |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3652891 |
atttcacaagcaatttatagtatttttaaaaaccataacctaatccatagaac-ttttttttcttgaccgaactaatccaaagaattgaaaaccgtacaa |
3652989 |
T |
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| Q |
612 |
aactgaatattattttatatatatttggatg |
642 |
Q |
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| T |
3652990 |
aactgaatattattttatatatatttggatg |
3653020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 468
Target Start/End: Original strand, 27244561 - 27244613
Alignment:
| Q |
418 |
ggtggtgtccgggattcgaatctcatatct--tacatatattatgtattgtcc |
468 |
Q |
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|
| T |
27244561 |
ggtggtgtccgggattcgaatctcaaatcttatatatatattatgtattgtcc |
27244613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 470
Target Start/End: Original strand, 14897605 - 14897651
Alignment:
| Q |
424 |
gtccgggattcgaatctcatatcttacatatattatgtattgtccat |
470 |
Q |
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|
| T |
14897605 |
gtccggggttcaaacctcatatcttacatatattatatattgtccat |
14897651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 468
Target Start/End: Original strand, 36683459 - 36683509
Alignment:
| Q |
418 |
ggtggtgtccgggattcgaatctcatatcttacatatattatgtattgtcc |
468 |
Q |
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| T |
36683459 |
ggtggtgtctgggattcgaaccccatatcttgcatatattatgcattgtcc |
36683509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 6274533 - 6274570
Alignment:
| Q |
431 |
attcgaatctcatatcttacatatattatgtattgtcc |
468 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||| |
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| T |
6274533 |
attcgaatctcagatcttacatatatcatgtattgtcc |
6274570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 470
Target Start/End: Complemental strand, 17261840 - 17261811
Alignment:
| Q |
441 |
catatcttacatatattatgtattgtccat |
470 |
Q |
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| T |
17261840 |
catatcttacatatattatgtattgtccat |
17261811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 35109471 - 35109423
Alignment:
| Q |
419 |
gtggtgtccgggattcgaatctcatatcttacatatattatgtattgtc |
467 |
Q |
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| T |
35109471 |
gtggtgtccgggattcgaacctcggaccttgcatatattatgtattgtc |
35109423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 470
Target Start/End: Original strand, 21052553 - 21052598
Alignment:
| Q |
425 |
tccgggattcgaatctcatatcttacatatattatgtattgtccat |
470 |
Q |
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||||||||||||| |||||| ||| ||||||||||||||| ||||| |
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| T |
21052553 |
tccgggattcgaacctcataccttgcatatattatgtattatccat |
21052598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 418 - 470
Target Start/End: Original strand, 3672541 - 3672593
Alignment:
| Q |
418 |
ggtggtgtccgggattcgaatctcatatcttacatatattatgtattgtccat |
470 |
Q |
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| T |
3672541 |
ggtggtgtccgaggtttgaaccccatatcttgcatatattatgtattgtccat |
3672593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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