View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20102_high_3 (Length: 669)
Name: NF20102_high_3
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20102_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 93 - 652
Target Start/End: Complemental strand, 36960342 - 36959783
Alignment:
| Q |
93 |
ctattatttatgcagaagtgcagccgatggagatacgacttcaaaggctgtgcttgattgtgaggaccctgtgatagtgctatcacttgaagttgaggtc |
192 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36960342 |
ctattatttatgtagaagtgcagcggatggagatacgacttcaaaggctgtgcttgattgtgaggaccctgtgatagtgctatcacttgaagttgaggtc |
36960243 |
T |
|
| Q |
193 |
ccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggtagatgcattcatctgtaatggaagattag |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36960242 |
ccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggtagatgcattcatctgtaatggaagattag |
36960143 |
T |
|
| Q |
293 |
gtaatggagcatcaaagttaagcacttgaacaacttgcctaatcacaggcctctgaagatgatctgtatgagtacaccaaagtccaactatcattaacct |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36960142 |
gtaatggagcatcaaagttaagcacttgaacaacttgcctaatcataggcctctgaagatgatctgtatgagtacaccaaagtccaactatcattaacct |
36960043 |
T |
|
| Q |
393 |
ctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaa |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36960042 |
ctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaa |
36959943 |
T |
|
| Q |
493 |
atatgttcttcactaagacttggttcaattgcctttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcct |
592 |
Q |
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| T |
36959942 |
atatgttcttcactaagacttggttcaattgcctttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcct |
36959843 |
T |
|
| Q |
593 |
ttcctcttgtagcagcttcaggtgatagatatccatatgttcctgctaaaacagttgtct |
652 |
Q |
| |
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| T |
36959842 |
ttcctcttgtagcagcttcaggtgatagatatccatatgttcctgctaaaacagttgtct |
36959783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 93 - 652
Target Start/End: Complemental strand, 36950208 - 36949649
Alignment:
| Q |
93 |
ctattatttatgcagaagtgcagccgatggagatacgacttcaaaggctgtgcttgattgtgaggaccctgtgatagtgctatcacttgaagttgaggtc |
192 |
Q |
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|||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950208 |
ctattatttatgtagcagtgcagccgatggagatatgacttcaaaggctgtgcttgattgtgaggaccctgtgatagtgctatcacttgaagttgaggtc |
36950109 |
T |
|
| Q |
193 |
ccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggtagatgcattcatctgtaatggaagattag |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950108 |
ccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggtagatgcattcatctgtaatggaagattag |
36950009 |
T |
|
| Q |
293 |
gtaatggagcatcaaagttaagcacttgaacaacttgcctaatcacaggcctctgaagatgatctgtatgagtacaccaaagtccaactatcattaacct |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950008 |
gtaatggagcatcaaagttaagcacttgaacaacttgcctaatcataggcctctgaagatgatctgtatgagtacaccaaagtccaactatcattaacct |
36949909 |
T |
|
| Q |
393 |
ctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaa |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36949908 |
ctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccatatagttcgcaaacccaatccaccaagtaa |
36949809 |
T |
|
| Q |
493 |
atatgttcttcactaagacttggttcaattgcctttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcct |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36949808 |
atatgttcttcactaagacttggttcaattgcctttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcct |
36949709 |
T |
|
| Q |
593 |
ttcctcttgtagcagcttcaggtgatagatatccatatgttcctgctaaaacagttgtct |
652 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36949708 |
ttcctcttgtagcagcttcaggtgatagatatccatatgttcctgctaaaacagttgtct |
36949649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 606
Target Start/End: Original strand, 36941572 - 36941652
Alignment:
| Q |
526 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
606 |
Q |
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||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
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| T |
36941572 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
36941652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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