View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20102_high_4 (Length: 570)
Name: NF20102_high_4
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20102_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 76 - 495
Target Start/End: Complemental strand, 35725831 - 35725402
Alignment:
| Q |
76 |
tagagtaatggtcctataccatccatcccatggggagacacaaactatgggtttannnnnnnaagaacttctataattatttttcaatgtaacacaaaat |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35725831 |
tagagtaatggtcctataccatccatcccatggggagacacaaactatgggtttatttttttaagaacttctataattatttttcaatgtaacacaaaat |
35725732 |
T |
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| Q |
176 |
taaaagcaaaagatggttggtcgtgtatgtggactgcatttgtccttcaaaaatgagattgcaatttgttaattgtgcattggtctaagttaaagtttgt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35725731 |
taaaagcaaaagatggttggtcgtgtatgtggactgcatttgtccttcaaaaatgagattgcaatttgttaattgtgcattggtctaagttaaagtttgt |
35725632 |
T |
|
| Q |
276 |
tatgatgcgatgcaaagcaaaagttccatacttcaatttcttaattagtttcgttttgctcttatgctttctctttcgagtgacataaaaaattagacgt |
375 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| ||| | | |
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| T |
35725631 |
tatgatgcgatgcaaagcaaaagttccttacttcaatttc----ttagtttcgttttgctcttatgctttctctttcaagtgacatagaaaactaggcat |
35725536 |
T |
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| Q |
376 |
--------------ttatttcgattctgttttgatgatgttggtgactttgtttctatatttctcttaaccaatcattaaattttcaaaaacttaaagtc |
461 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35725535 |
ttaaggaagtataattatttcgattctgttttgatgatgttgatgactttgtttctatatttctcttaaccaatcattaaattttcaaaaatttaaagtc |
35725436 |
T |
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| Q |
462 |
gccaaagtattttttgaatcattgttcaaactac |
495 |
Q |
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| T |
35725435 |
gccaaagtattttttgaatcattgttcaaactac |
35725402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 35725890 - 35725852
Alignment:
| Q |
17 |
ccatcccatgtttagcaaaaataaaggcttgattaatct |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
35725890 |
ccatcccatgtttagcaaaaataaaggcttgattaatct |
35725852 |
T |
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