View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20102_high_8 (Length: 367)
Name: NF20102_high_8
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20102_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 31137693 - 31137352
Alignment:
| Q |
1 |
tgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatcttccaccagga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31137693 |
tgcaatcacaatgctcctcctcctattaacatacatatctataaactttatttccctcattggtagaaccaaaaaacaaaattacaatcttccaccagga |
31137594 |
T |
|
| Q |
101 |
ccttcacctcttgcaattatgctaaacatttttgaattaggnnnnnnnccacaacaatcattagccaaattctcaaaaatatatggtccaataatgcata |
200 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31137593 |
ccttcacctcttgcaattatgctaaacgtttttgaattaggaaaaaaaccacaacaatcattagccaaattctcaaaaatatatggtccaataatgcata |
31137494 |
T |
|
| Q |
201 |
tgaagctagggcaaataactaccattataatttcttcagcagaagtagcacaagaagtgctagaaacacatgatctcttactctcaaacagaacagtccc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31137493 |
tgaagctagggcaaataactaccattataatttcttcagcagaagtagcacaagaagttctacaaacacatgatctcttactctcaaacagaacagtccc |
31137394 |
T |
|
| Q |
301 |
tcaagctgttacagttttcaatcatgatcattttagcttacc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31137393 |
tcaagctgttacagttttcaatcatgatcattttagcttacc |
31137352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 31151345 - 31151691
Alignment:
| Q |
1 |
tgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatcttccaccagga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31151345 |
tgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttcactcattggtagaaccaaaaaacaaaattacaatcttccaccagga |
31151444 |
T |
|
| Q |
101 |
ccttcacctcttgcaattatgctaaacatttttgaattaggnnnnnnn-ccacaacaatcattagccaaattctcaaaaatatatggtccaataatgcat |
199 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31151445 |
ccttcacctcttgcaattatgctaaacgtttttgaacttggaaaaaaaaccacaacaatcattagccaaattctcaaaaatatatggtccaataatgcat |
31151544 |
T |
|
| Q |
200 |
atgaagctagggcaaataactaccattataatttcttcagcagaagtagcacaagaagtgctagaaacacatgatctcttactctcaaacagaacagtcc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31151545 |
atgaagctagggcaaataactaccattataatttcttcagcagaagtagcacaagaagtgctacaaacacatgatctcttactctcaaacagaacagtcc |
31151644 |
T |
|
| Q |
300 |
ctcaagctgttacagttttcaatcatgatcattttagcttaccgttt |
346 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31151645 |
ctcaagctgttacagttttcaatcatgatcattttagcttaccgttt |
31151691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 31129499 - 31129804
Alignment:
| Q |
1 |
tgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatcttccaccagga |
100 |
Q |
| |
|
||||| |||||||||||||||| |||| |||||||||||||||||||| |||| ||| | |||||||| ||| ||||| || ||||||||||||||| |
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|
| T |
31129499 |
tgcaaccacaatgctcctcctcacattagcatacatatctataaactttttttcactccattctagaaccaaaaaccaaaactataatcttccaccagga |
31129598 |
T |
|
| Q |
101 |
ccttcacctcttgcaattatgctaaacatttttgaattaggnnnnnnnccacaacaatcattagccaaattctcaaaaatatatggtccaataatgcata |
200 |
Q |
| |
|
||||||| | || |||| ||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31129599 |
ccttcacgttttacaataatgctaaacgtttttgaattaggaaaaaaaccacaatattcattagccaaattctcaaaaatacatggtccaataatgcatt |
31129698 |
T |
|
| Q |
201 |
tgaagctagggcaaataactaccattataatttcttcagcagaagtagcacaagaagtgctagaaacacatgatctcttactctcaaacagaacagtccc |
300 |
Q |
| |
|
| ||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||| | || |
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| T |
31129699 |
taaagctagggcaaatatcaaccatagttatttcttcagcagaagtagcacaagaagtgcttcaaacacatgatatcttattctcaaatagaacaattcc |
31129798 |
T |
|
| Q |
301 |
tcaagc |
306 |
Q |
| |
|
|||||| |
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|
| T |
31129799 |
tcaagc |
31129804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 24469066 - 24468725
Alignment:
| Q |
1 |
tgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatcttccaccagga |
100 |
Q |
| |
|
||||| |||||||||| | ||| | ||||||||||| ||||||| ||| |||| |||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
24469066 |
tgcaaccacaatgctcattctctttttaacatacatttctataagcttaatttcactcattggtagaaccaaaaaacaaaagtacaatcttccaccaggt |
24468967 |
T |
|
| Q |
101 |
ccttcacctcttgcaattatgctaaacatttttgaattaggnnnnnnnccacaacaatcattagccaaattctcaaaaatatatggtccaataatgcata |
200 |
Q |
| |
|
||||||| |||| |||||||| ||| ||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
24468966 |
ccttcacttcttacaattatgagaaatgtttttgaattaggaaaaaaaccacaatactcattagccaaattctccaaaatatatggcccaataatgcatt |
24468867 |
T |
|
| Q |
201 |
tgaagctagggcaaataactaccattataatttcttcagcagaagtagcacaagaagtgctagaaacacatgatctcttactctcaaacagaacagtccc |
300 |
Q |
| |
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| |||||||| |||||||| || || ||||||| ||| |||| |||||||||||||| | |||| |||||||||| |||| || ||||| | || |
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| T |
24468866 |
taaagctaggtcaaataacaactatagtaatttcatcaccagatatagcacaagaagtgtttcaaacccatgatctctcgatctcggaccgaacaattcc |
24468767 |
T |
|
| Q |
301 |
tcaagctgttacagttttcaatcatgatcattttagcttacc |
342 |
Q |
| |
|
||||||||| ||||| | |||||| |||||||||||||| |
|
|
| T |
24468766 |
tcaagctgtagcagttcttggtcatgaacattttagcttacc |
24468725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 24490321 - 24490061
Alignment:
| Q |
1 |
tgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttccctcattggtagaaccagaaaacaaaattacaatcttccaccagga |
100 |
Q |
| |
|
||||| |||||||||| | || | ||||||||||| |||||| ||| ||||| |||||| |||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
24490321 |
tgcaaccacaatgctcattctatttttaacatacattgctataagcttactttcactcattcttagaaccaaaaaacaaaagtacaatcttccaccaggt |
24490222 |
T |
|
| Q |
101 |
ccttcacctcttgcaattatgctaaacatttttgaattaggnnnnnnnccacaacaatcattagccaaattctcaaaaatatatggtccaataatgcata |
200 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
24490221 |
ccttcacctcttacaattatacgaaatgtttttgaattaggaaaaaatccacaatactcattagccaaattctccaaaatatatggcccaataatgcatt |
24490122 |
T |
|
| Q |
201 |
tgaagctagggcaaataactaccattataatttcttcagcagaagtagcacaagaagtgct |
261 |
Q |
| |
|
|||||||||| ||||| | ||||| ||||||| ||| |||| |||||||||||||||| |
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|
| T |
24490121 |
tgaagctaggtcaaatttcaaccatagtaatttcatcaccagatatagcacaagaagtgct |
24490061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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