View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20102_high_9 (Length: 295)
Name: NF20102_high_9
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20102_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 1843396 - 1843662
Alignment:
| Q |
17 |
agatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgag |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1843396 |
agatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgag |
1843495 |
T |
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| Q |
117 |
gttaatgaataagcactcttggatcaacgatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcctttatgaacctggtgat |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1843496 |
gttaatgaataagcactcttggatcaaagatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcatttatgaacctggtgat |
1843595 |
T |
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| Q |
217 |
agcatcacacatggagatatcggatatgacagcttgaaagaccatgtactaatagcgttggatgatg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
1843596 |
agcatcacacatggagatatcggatatgacagcttgaaagaccatgtactgatagcattggatgatg |
1843662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 1869005 - 1869271
Alignment:
| Q |
17 |
agatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgag |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1869005 |
agatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgag |
1869104 |
T |
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| Q |
117 |
gttaatgaataagcactcttggatcaacgatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcctttatgaacctggtgat |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1869105 |
gttaatgaataagcactcttggatcaatgatgactcaaatgtagaggagagtcggttcttgcttcatgaatcatcatctagcttttatgaacctggtgat |
1869204 |
T |
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| Q |
217 |
agcatcacacatggagatatcggatatgacagcttgaaagaccatgtactaatagcgttggatgatg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
1869205 |
agcatcacacatggagatatcggatatgacagcttgaaagaccatgtactgatagcattggatgatg |
1869271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 1857407 - 1857673
Alignment:
| Q |
17 |
agatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgag |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1857407 |
agatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgag |
1857506 |
T |
|
| Q |
117 |
gttaatgaataagcactcttggatcaacgatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcctttatgaacctggtgat |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1857507 |
gttaatgaataagcactcttggatcaaagatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcatttatgaacctggtgat |
1857606 |
T |
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| Q |
217 |
agcatcacacatggagatatcggatatgacagcttgaaagaccatgtactaatagcgttggatgatg |
283 |
Q |
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|||| || ||||||||||||||||||||||||||||||||| || ||||| ||| | |||||||||| |
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| T |
1857607 |
agcaacaaacatggagatatcggatatgacagcttgaaagatcacgtactgataacattggatgatg |
1857673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 1815636 - 1815437
Alignment:
| Q |
18 |
gatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgagg |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1815636 |
gatcatggaggtggctgttcttgcggcgaactgtttgagacttataggggaggaaagaccaagcatgaaggaagtggctatggaattggagggaatgagg |
1815537 |
T |
|
| Q |
118 |
ttaatgaataagcactcttggatcaacgatgactcaaatgtagaggagagt-aggtacttgcttcatgaatcatcatctagcctttatgaacctggtgat |
216 |
Q |
| |
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|||||| ||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
1815536 |
ttaatggataagcactcttggatcaatgcagaccttaatgtagaggagagtccactacttgcttcatgaatcatcatctagcatttatgaatttggtgat |
1815437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 9161452 - 9161353
Alignment:
| Q |
24 |
ggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
123 |
Q |
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|||||| ||| ||||||| || | |||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || ||||||||| |
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| T |
9161452 |
ggaggttgctattcttgcagcaaggtgtttgagactaagaggggatgaaaggcctagcatgaaggaagtggcaatggagttggatggtataaggttaatg |
9161353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 9170254 - 9170179
Alignment:
| Q |
48 |
gtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
123 |
Q |
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|||||| |||||||||||||| |||||||| | |||||||||||||| ||||| ||||| || || ||||||||| |
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| T |
9170254 |
gtgtttaagacttagaggggatgaaagaccttgtatgaaggaagtggcaatggagttggatggcataaggttaatg |
9170179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 9199845 - 9199746
Alignment:
| Q |
24 |
ggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
123 |
Q |
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|||||| ||| ||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| |||||||| ||||| || || ||||||||| |
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| T |
9199845 |
ggaggttgctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttggatggtataaggttaatg |
9199746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 9119000 - 9119097
Alignment:
| Q |
24 |
ggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaa |
121 |
Q |
| |
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|||||| ||| ||||||| || | ||||||||||||| |||| || |||||||| || ||||||||| | |||||||| ||||| || || ||||||| |
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| T |
9119000 |
ggaggttgctattcttgcagcaaggtgtttgagacttcgaggagaggaaagacctagtatgaaggaaatagctatggagttggatggtataaggttaa |
9119097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 123
Target Start/End: Complemental strand, 9218350 - 9218262
Alignment:
| Q |
35 |
ttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
123 |
Q |
| |
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||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| |||||||| ||||| || || ||||||||| |
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| T |
9218350 |
ttcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttggatggcataaggttaatg |
9218262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 9229235 - 9229131
Alignment:
| Q |
35 |
ttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactc |
134 |
Q |
| |
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||||||| || | ||| |||||||||| ||| || |||||||| |||||||| |||||||||||||| | ||||| | ||||||||| | |||||| | |
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| T |
9229235 |
ttcttgctgcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagaggggttaaggttaatggagaagcaccc |
9229136 |
T |
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| Q |
135 |
ttgga |
139 |
Q |
| |
|
||||| |
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|
| T |
9229135 |
ttgga |
9229131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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