View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20102_low_11 (Length: 250)

Name: NF20102_low_11
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20102_low_11
NF20102_low_11
[»] chr8 (3 HSPs)
chr8 (1-114)||(15868010-15868123)
chr8 (153-226)||(15867899-15867972)
chr8 (23-67)||(5573325-5573369)
[»] chr4 (4 HSPs)
chr4 (23-58)||(34941315-34941350)
chr4 (22-67)||(37784957-37785002)
chr4 (23-59)||(2096908-2096944)
chr4 (23-67)||(24993553-24993597)
[»] chr2 (3 HSPs)
chr2 (1-59)||(2051628-2051687)
chr2 (22-67)||(27865912-27865956)
chr2 (23-59)||(15411727-15411763)
[»] chr1 (1 HSPs)
chr1 (22-67)||(39627668-39627713)
[»] chr3 (1 HSPs)
chr3 (27-67)||(30472988-30473028)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 15868123 - 15868010
Alignment:
Q  1 tataatattctatatgtcaaaaaactaaaagtaacaattttttattgaaaaacaacaatcacttattnnnnnnnttatttttaatataaaatgcacaaat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||        |||||||||||||||||||| ||||    
T  15868123 tataatattctatatgtcaaaaaactaaaagtaacaactttttattgaaaaacaacaattacttattaaaaaaaatatttttaatataaaatgcataaat 15868024  T
Q  101 ttcaatgcaaatct 114  Q
    || |||||||||||    
T  15868023 tttaatgcaaatct 15868010  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 15867972 - 15867899
Alignment:
Q  153 agggataatatgtgaaaacttacgcatcatnnnnnnnnctctttaaaaattaaaacaatatgatgttcatataa 226  Q
    |||||||||||||| ||||||||| |||||        ||||||||||||||||||||||||||||||||||||    
T  15867972 agggataatatgtggaaacttacggatcataaaaaaaactctttaaaaattaaaacaatatgatgttcatataa 15867899  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 5573325 - 5573369
Alignment:
Q  23 aactaaaagtaacaattttttattgaaaaacaacaatcacttatt 67  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||    
T  5573325 aactaaaaataacaagtttttattgaaaaacaacaatcatttatt 5573369  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 34941315 - 34941350
Alignment:
Q  23 aactaaaagtaacaattttttattgaaaaacaacaa 58  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34941315 aactaaaagtaacaactttttattgaaaaacaacaa 34941350  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 37785002 - 37784957
Alignment:
Q  22 aaactaaaagtaacaattttttattgaaaaacaacaatcacttatt 67  Q
    |||||||||||| ||| ||||||||||||||||| ||||| |||||    
T  37785002 aaactaaaagtagcaactttttattgaaaaacaataatcatttatt 37784957  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 2096908 - 2096944
Alignment:
Q  23 aactaaaagtaacaattttttattgaaaaacaacaat 59  Q
    |||||||||| |||| |||||||||||||||||||||    
T  2096908 aactaaaagtgacaactttttattgaaaaacaacaat 2096944  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 24993597 - 24993553
Alignment:
Q  23 aactaaaagtaacaattttttattgaaaaacaacaatcacttatt 67  Q
    ||||||||  ||| ||||||||||||||||||||||||| |||||    
T  24993597 aactaaaaaaaacgattttttattgaaaaacaacaatcatttatt 24993553  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2051628 - 2051687
Alignment:
Q  1 tataatattctatatgtcaaaa-aactaaaagtaacaattttttattgaaaaacaacaat 59  Q
    ||||||||| ||||||| |||| |||||||| || ||| |||||||||||||||||||||    
T  2051628 tataatattgtatatgttaaaacaactaaaattagcaagtttttattgaaaaacaacaat 2051687  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 27865956 - 27865912
Alignment:
Q  22 aaactaaaagtaacaattttttattgaaaaacaacaatcacttatt 67  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||    
T  27865956 aaactaaaagtaataattttt-attgaaaaacaacaatcaattatt 27865912  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 15411763 - 15411727
Alignment:
Q  23 aactaaaagtaacaattttttattgaaaaacaacaat 59  Q
    |||||||||||  ||||||||||||||||||||||||    
T  15411763 aactaaaagtagtaattttttattgaaaaacaacaat 15411727  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 39627713 - 39627668
Alignment:
Q  22 aaactaaaagtaacaattttttattgaaaaacaacaatcacttatt 67  Q
    ||||||||| || ||| |||| ||||||||||||||||||||||||    
T  39627713 aaactaaaaatagcaacttttaattgaaaaacaacaatcacttatt 39627668  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 30473028 - 30472988
Alignment:
Q  27 aaaagtaacaattttttattgaaaaacaacaatcacttatt 67  Q
    |||| ||||||||||||||| |||||||||||||| |||||    
T  30473028 aaaaataacaattttttatttaaaaacaacaatcatttatt 30472988  T

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