View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20102_low_5 (Length: 522)
Name: NF20102_low_5
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20102_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 4904377 - 4904872
Alignment:
| Q |
18 |
gatactcattttcaccattatgttttagataacctttgtacactatactgtatagcgattgtccaagttttcgagtttcatcaaagttattggttgattt |
117 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4904377 |
gatactcattttcaccattatgtttgagataacctttgtacactatactgtatagtgattgtccaagttttcgagtttcatcaaagttattgcttgattt |
4904476 |
T |
|
| Q |
118 |
cttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacattgctgcttcctggatgaacttttatggtttgagtattttacaggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4904477 |
cttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacattgctgcttcctggatgaacttttatggtttgagtattttacaggc |
4904576 |
T |
|
| Q |
218 |
atatttcccataatatttttgtttaatagccaatgatcaaggttcacattcagaggtacaaaaataccaatcctaagatataataagtcatagaaattag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
4904577 |
atatttcccataatatttttgtttaatagccaatgatcaaggttcacattcagaggtacataaataccaatcctaagatataataagtcataggaattag |
4904676 |
T |
|
| Q |
318 |
cataagatataataagtcatttggtaaaaacattgcaatatgtggtgaaccnnnnnnngacaaaatagattaaaatttacctgcaagttcaatcctcatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4904677 |
cataagatataataagtcatttggtaaaaacattgcaatatgtggtgtaccaaaaaaagacaaaatagattaaattttacctgcaagttcaatcctcatg |
4904776 |
T |
|
| Q |
418 |
tgctatcgtccatgatcagcaaaggaattagctcaatactttgttgaaggaaggaatcttggaagcttattgtttatagaaaatggtatatgatga |
513 |
Q |
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| T |
4904777 |
tgctatcgtccatgatcagcaaaggaattagctcaatactttgttgaaggaaggaatcttggaagcttattgtttatagaaaatggtatatgatga |
4904872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 5821952 - 5821797
Alignment:
| Q |
18 |
gatactcattttcaccattatgttttagataacctttgtacactatactgtatagcgattgtccaagttttcgagtttcatcaaagttattggttgattt |
117 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||||||||||||||||||| |||| |||| || || ||||||| |||| | ||||||||||||||||| |
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| T |
5821952 |
gatactcagtttcaccactatgtttgagataacctttgtacactatactgaatagtgattttctaatttttcgatcttcagcgaagttattggttgattt |
5821853 |
T |
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| Q |
118 |
cttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacatt |
173 |
Q |
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| T |
5821852 |
cctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacatt |
5821797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 4921667 - 4921461
Alignment:
| Q |
18 |
gatactcattttcaccattatgttttagataacctttgtacactatactgtatagcgattgtccaagttttcgagtttcatcaaagttattggttgattt |
117 |
Q |
| |
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|||| |||||||||||||||| ||| | ||| |||||||| |||||| |||| |||||||| ||||||| ||| ||||||||||||||| | ||| |
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| T |
4921667 |
gataatcattttcaccattatatttgacatagcctttgtagactatattgtagtttacttgtccaatttttcgatttttatcaaagttattggtagcttt |
4921568 |
T |
|
| Q |
118 |
cttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacattgctgcttcctggatgaacttttatggtttgagtattttacaggc |
217 |
Q |
| |
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||||||||| || |||||||| | ||||||||||||||||||| |||||| |||| || ||| |||| |||||| || | |||||||||||| || || |
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| T |
4921567 |
cttaagatcgtccagagaaaactcatggcatagttcttttataaatgttgaacat---tgtttcttggacgaacttctacgctttgagtattttgcaagc |
4921471 |
T |
|
| Q |
218 |
atatttccca |
227 |
Q |
| |
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|||||||||| |
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|
| T |
4921470 |
atatttccca |
4921461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 79 - 227
Target Start/End: Complemental strand, 4927848 - 4927703
Alignment:
| Q |
79 |
tccaagttttcgagtttcatcaaagttattggttgatttcttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacattgctgc |
178 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| | ||||||||| || || |||||||| | ||||||||| || |||||| |||||| |||| || |
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| T |
4927848 |
tccaatttttcgattttcatcaaagttattggtagctttcttaagctcgtccagagaaaactcatggcatagctcatttataaatgttgaacat---tgt |
4927752 |
T |
|
| Q |
179 |
ttcctggatgaacttttatggtttgagtattttacaggcatatttccca |
227 |
Q |
| |
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||| |||| |||||| || | |||||||||||| || |||||||||||| |
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| T |
4927751 |
ttcttggacgaacttctacgctttgagtattttgcaagcatatttccca |
4927703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 4908381 - 4908507
Alignment:
| Q |
98 |
tcaaagttattggttgatttcttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacattgctgcttcctggatgaacttttat |
197 |
Q |
| |
|
||||||||||| || |||||||||||||| || |||||||||||||||||| | |||| |||| |||||| || || ||| |||| | ||||||| |
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| T |
4908381 |
tcaaagttattagtagatttcttaagatcatccagagaaaattgatggcatcgctcttctataacagttggatat---tgtttcttggaaggacttttac |
4908477 |
T |
|
| Q |
198 |
ggtttgagtattttacaggcatatttccca |
227 |
Q |
| |
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| ||||| ||||||||| |||||||||||| |
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| T |
4908478 |
gctttgaatattttacaagcatatttccca |
4908507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 485
Target Start/End: Complemental strand, 4927231 - 4927166
Alignment:
| Q |
421 |
tatcgtccatgatcagcaaa-ggaattagctcaatactttgttgaaggaaggaatcttggaagctt |
485 |
Q |
| |
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||||||||||| |||||||| |||||||||||||| || |||| || |||||||||||| |||||| |
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| T |
4927231 |
tatcgtccatgttcagcaaaaggaattagctcaatgctgtgttcaacgaaggaatcttgaaagctt |
4927166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 4908301 - 4908350
Alignment:
| Q |
18 |
gatactcattttcaccattatgttttagataacctttgtacactatactg |
67 |
Q |
| |
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|||| ||| |||||||||||||||| |||||||||||||| |||||||| |
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| T |
4908301 |
gataatcagtttcaccattatgtttgagataacctttgtaagctatactg |
4908350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 478
Target Start/End: Complemental strand, 4920959 - 4920866
Alignment:
| Q |
386 |
attaaaatttacctgcaagttcaatcctcatgtgctatcgtccatgatca-gcaaaggaattagctcaata--ctttgttgaaggaaggaatcttg |
478 |
Q |
| |
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|||||| |||||||||||| |||||||||| | | |||||||| |||||| |||||||||| | | ||||| || |||||||||||||||||||| |
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| T |
4920959 |
attaaattttacctgcaagatcaatcctcaagcg-tatcgtcc-tgatcaggcaaaggaataaacacaatactctctgttgaaggaaggaatcttg |
4920866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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