View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20102_low_6 (Length: 424)
Name: NF20102_low_6
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20102_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Complemental strand, 11399385 - 11398990
Alignment:
| Q |
13 |
aatatgagctaaggagacaacacaagcaataaaactccatcaaaaaactacatatatatatgcataggcgataagaaacccaaagtcttgttatagtttt |
112 |
Q |
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| T |
11399385 |
aatatgagctaaggagacaacataagcaataagactccatcaaaaaactacatatatatatgcataggcgataagaaacccaaagtcttgttatagtttt |
11399286 |
T |
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| Q |
113 |
gccaattacctgattttacttcaaagcaatcagactcctcgtcagattcaatgacaattgcatagtctcttcctccccttgtaccctgtcattcaaagtt |
212 |
Q |
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| T |
11399285 |
gccaattacctgattttacttcaaagcaatcagactcctcgtcagattcaatgacaattgcatagtctcttcctccccttataccctgtcattcaaagtt |
11399186 |
T |
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| Q |
213 |
tcaaacaatttgtcaaattgataggcaataagcacaaccacacaagccttttgcgtgaaattaaatgacaaatgtcactgccaagtgcatatggcatcaa |
312 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11399185 |
tcaaacaatttgtcaaattgataggcagtaagcacaactgcacaagccttttgcgtgaaattaaatgacaaatgtcactgccaagtgcatatggcatcaa |
11399086 |
T |
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| Q |
313 |
caagttataagaaggaaagatcaacacaattggattgatttagaaggcacataaatcatgaataggaagagaccaaaattttgaaaataccttctc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11399085 |
caagttataagaaggaaagatcaacacaattggattgatttagaaggcacataaatcatgaataggaagagaccaaaattttgaaaataccttctc |
11398990 |
T |
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