View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20102_low_7 (Length: 416)

Name: NF20102_low_7
Description: NF20102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20102_low_7
NF20102_low_7
[»] chr6 (7 HSPs)
chr6 (13-401)||(31040565-31040948)
chr6 (13-285)||(31066557-31066829)
chr6 (305-396)||(17154648-17154739)
chr6 (215-247)||(31025572-31025604)
chr6 (209-253)||(31030918-31030962)
chr6 (306-385)||(29730305-29730383)
chr6 (319-397)||(10887069-10887146)
[»] chr4 (2 HSPs)
chr4 (333-397)||(2096924-2096988)
chr4 (319-396)||(16667446-16667522)
[»] chr3 (2 HSPs)
chr3 (332-396)||(23320122-23320186)
chr3 (327-387)||(46922833-46922892)
[»] chr2 (8 HSPs)
chr2 (335-391)||(9450312-9450368)
chr2 (305-397)||(20566078-20566169)
chr2 (305-371)||(5853550-5853617)
chr2 (305-371)||(16493619-16493686)
chr2 (305-371)||(22704561-22704628)
chr2 (305-371)||(25948063-25948130)
chr2 (305-387)||(15411693-15411774)
chr2 (305-397)||(23932591-23932682)
[»] chr8 (2 HSPs)
chr8 (305-371)||(40226074-40226141)
chr8 (160-200)||(33534876-33534916)
[»] chr1 (1 HSPs)
chr1 (305-371)||(36490805-36490870)
[»] scaffold0305 (1 HSPs)
scaffold0305 (307-387)||(18067-18146)
[»] chr5 (1 HSPs)
chr5 (305-397)||(35469579-35469671)


Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 31040948 - 31040565
Alignment:
Q  13 gaacctgtgaatgctacactatacaggaaaatcattggctcactcatatatatgtgcaacactaggctagacattaaatttgatcacattaattattatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31040948 gaacctgtgaatgctacactatacaggaaaatcattggctcactcatatatatgtgcaacactaggctagacattaaatttgatcacattaattattatt 31040849  T
Q  113 tattttcgatagtacagtatatggataaataaggtgaataatagttgtattttgtataaaaacttttttgtagtgaattaaattgatctactagatgtac 212  Q
    ||||||||||||||     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31040848 tattttcgatagta-----tatggataaataaggtgaataatagttggattttgtataaaaacttttttgtagtgaattaaattgatctactagatgtac 31040754  T
Q  213 acattttaattctcaatttagaacttttcataaaaataaatatgtattaaaacccttcgatctatttttcaataaggtttgtctaacatgtgcatgttaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  31040753 acattttaattctcaatttagaacttttcataaaaataaatatgtattaaaacctttcgatctatttttcaataagatttgtctaacatgtgcatgttaa 31040654  T
Q  313 aggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagttctatt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31040653 aggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagttctatt 31040565  T

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Target: chr6; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 31066829 - 31066557
Alignment:
Q  13 gaacctgtgaatgctacactatacaggaaaatcattggctcactcatatatat--gtgcaacactaggctagacattaaatttgatcacattaat-tatt 109  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||    
T  31066829 gaacatgtgaatgctacactatacagaaaaatcattggctcactcatatatatttgtgcaacactaggctagacattaaatttgatcacattaatatatt 31066730  T
Q  110 attt-attttcgatagtacagtatatggataaataaggtgaataatagttgtattttgtataaaaacttttttgtagtgaattaaattgatctactagat 208  Q
     ||| | |||||||||||     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31066729 tttttactttcgatagta-----tatggatgaataaggtgaataatagttgtattttgtataaaaacttttttgtagtgaattaaattgatctactagat 31066635  T
Q  209 gt--acacattttaattctcaatttagaacttttcataaaaataaatatgtattaaaacccttcgatctatttttcaat 285  Q
    ||  ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||| ||||||    
T  31066634 gtaaacatattttaattctcaatttag-acttttcataaaaataagtatgtattaaaacccttcaatcaattgttcaat 31066557  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 396
Target Start/End: Original strand, 17154648 - 17154739
Alignment:
Q  305 catgttaaaggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagtt 396  Q
    |||||||||| |||||||| || ||| |||||||||||||||||| | | | ||||| |||||||||  | |||||||| ||||||| ||||    
T  17154648 catgttaaagaaattaaaagtattaatttttttattgaaaaacaataatcaattattaaaaaattatacatttaatatagaatacacaagtt 17154739  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 31025604 - 31025572
Alignment:
Q  215 attttaattctcaatttagaacttttcataaaa 247  Q
    |||||||||||||||||||||||||||||||||    
T  31025604 attttaattctcaatttagaacttttcataaaa 31025572  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 31030962 - 31030918
Alignment:
Q  209 gtacacattttaattctcaatttagaacttttcataaaaataaat 253  Q
    ||||||||| |||||||||||||||||||||| |||||| |||||    
T  31030962 gtacacattataattctcaatttagaacttttaataaaagtaaat 31030918  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 29730305 - 29730383
Alignment:
Q  306 atgttaaaggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaa 385  Q
    |||||||||  |||||||||| ||| |||| ||||||||||||||| | ||||||| |||| |||| || ||||||||||    
T  29730305 atgttaaagctattaaaattaataagtttt-tattgaaaaacaacagttatttattaaaaagttatatatttaatataaa 29730383  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 397
Target Start/End: Original strand, 10887069 - 10887146
Alignment:
Q  319 taaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagttc 397  Q
    ||||| |||||| |||||||||||||||||| ||| ||||||| ||||  ||  || |||||||||||||||| |||||    
T  10887069 taaaagtagtaa-ttttttattgaaaaacaaaacttatttattaaaaagctacatatttaatataaaatacacaagttc 10887146  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 2096924 - 2096988
Alignment:
Q  333 tttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagttc 397  Q
    ||||||||||||||||||| | ||||||| |||| |||| || |||||||||||| ||| |||||    
T  2096924 tttttattgaaaaacaacaattatttattaaaaagttatatatttaatataaaatgcacaagttc 2096988  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 16667522 - 16667446
Alignment:
Q  319 taaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagtt 396  Q
    ||||| |||||| ||||| |||||||||||||||| ||||||| ||||  ||  || |||||||||||||||| ||||    
T  16667522 taaaagtagtaa-tttttcattgaaaaacaacacttatttattaaaaagctacatatttaatataaaatacacaagtt 16667446  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 23320122 - 23320186
Alignment:
Q  332 ttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagtt 396  Q
    ||||||||||||||||| || | ||||||| ||||  ||| || |||||||||||||||||||||    
T  23320122 ttttttattgaaaaacatcaattatttattaaaaagatatatatttaatataaaatacacgagtt 23320186  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 46922892 - 46922833
Alignment:
Q  327 gtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaat 387  Q
    |||| |||||||||||||| |||||   ||||||| |||||||||||||||||||||||||    
T  46922892 gtaatttttttattgaaaa-caacaactatttattaaaaaattatgtacttaatataaaat 46922833  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 9450312 - 9450368
Alignment:
Q  335 tttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacac 391  Q
    ||||||||||||||||| | ||||||| ||||||||| || |||||| |||||||||    
T  9450312 tttattgaaaaacaacaattatttattaaaaaattatatatttaatagaaaatacac 9450368  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 20566169 - 20566078
Alignment:
Q  305 catgttaaaggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagttc 397  Q
    |||||||||| || ||||| ||| |||| ||| |||||||||||||| | ||||||| ||| ||||| || |||||| ||||||||| |||||    
T  20566169 catgttaaagtaactaaaaatagcaactattt-attgaaaaacaacaattatttattaaaatattatctatttaataaaaaatacacaagttc 20566078  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 5853617 - 5853550
Alignment:
Q  305 catgttaaaggaattaaaattagtaact-tttttattgaaaaacaacactgatttattgaaaaattat 371  Q
    |||||||||| |||||||| |||| | | ||||||||||||||||||| | ||||||| |||||||||    
T  5853617 catgttaaagcaattaaaagtagttagtgtttttattgaaaaacaacaattatttatttaaaaattat 5853550  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 16493686 - 16493619
Alignment:
Q  305 catgttaaaggaattaaaattagtaact-tttttattgaaaaacaacactgatttattgaaaaattat 371  Q
    |||||||||| |||||||| |||| | | ||||||||||||||||||| | ||||||| |||||||||    
T  16493686 catgttaaagcaattaaaagtagttaatgtttttattgaaaaacaacaattatttatttaaaaattat 16493619  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 22704561 - 22704628
Alignment:
Q  305 catgttaaaggaattaaaattagtaact-tttttattgaaaaacaacactgatttattgaaaaattat 371  Q
    |||||||||| |||||||| |||| | | ||||||||||||||||||| | ||||||| |||||||||    
T  22704561 catgttaaagcaattaaaagtagttagtgtttttattgaaaaacaacaattatttatttaaaaattat 22704628  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 25948063 - 25948130
Alignment:
Q  305 catgttaaaggaattaaaattagtaa-cttttttattgaaaaacaacactgatttattgaaaaattat 371  Q
    |||||||||| |||||||| |||| | | ||||||||||||||||||| | ||||||| |||||||||    
T  25948063 catgttaaagcaattaaaagtagttagcgtttttattgaaaaacaacaattatttatttaaaaattat 25948130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 15411774 - 15411693
Alignment:
Q  305 catgttaaaggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaat 387  Q
    |||||||||| || ||||| |||||| |||||||||||||||||||| | ||||||| ||||  ||  || ||||||||||||    
T  15411774 catgttaaagtaactaaaagtagtaa-ttttttattgaaaaacaacaataatttattaaaaagctacatatttaatataaaat 15411693  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 23932591 - 23932682
Alignment:
Q  305 catgttaaaggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagttc 397  Q
    ||||||||||||| ||||| ||||||| |||  ||||||||| |||| | ||||||| |||| || | || |||||||||||| ||| |||||    
T  23932591 catgttaaaggaactaaaaatagtaac-tttacattgaaaaagaacaattatttattaaaaagttttatagttaatataaaatgcacaagttc 23932682  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 40226141 - 40226074
Alignment:
Q  305 catgttaaaggaattaaaattagtaact-tttttattgaaaaacaacactgatttattgaaaaattat 371  Q
    |||||||||| |||||||| |||| | | ||||||||||||||||||| | ||||||| |||||||||    
T  40226141 catgttaaagcaattaaaagtagttagtgtttttattgaaaaacaacaattatttatttaaaaattat 40226074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 33534916 - 33534876
Alignment:
Q  160 tattttgtataaaaacttttttgtagtgaattaaattgatc 200  Q
    |||||||| | ||||| ||||||||||||||||||||||||    
T  33534916 tattttgtttgaaaacatttttgtagtgaattaaattgatc 33534876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 36490805 - 36490870
Alignment:
Q  305 catgttaaaggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattat 371  Q
    |||||||||| |||||||| |||||| |||| ||||||||||||||| | ||||||| |||| ||||    
T  36490805 catgttaaagcaattaaaagtagtaagtttt-tattgaaaaacaacaattatttattaaaaagttat 36490870  T

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Target: scaffold0305 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 387
Target Start/End: Complemental strand, 18146 - 18067
Alignment:
Q  307 tgttaaaggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaat 387  Q
    ||||||||||||||||| ||||||| | || ||| |||||||||| | |||||||  ||| |||| || ||||||||||||    
T  18146 tgttaaaggaattaaaagtagtaac-tcttaattaaaaaacaacaattatttattagaaagttatatatttaatataaaat 18067  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 35469579 - 35469671
Alignment:
Q  305 catgttaaaggaattaaaattagtaacttttttattgaaaaacaacactgatttattgaaaaattatgtacttaatataaaatacacgagttc 397  Q
    |||||||||| || ||||| ||| || |||||||||||||||||||| | | |||   |||| |||| || ||||||||||||| || |||||    
T  35469579 catgttaaagtaactaaaagtagcaatttttttattgaaaaacaacaatcaattaagaaaaagttatatatttaatataaaataaactagttc 35469671  T

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