View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20103_high_12 (Length: 316)
Name: NF20103_high_12
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 36521593 - 36521299
Alignment:
| Q |
16 |
ttattatggagtataattttgatacgcataaaatgatgattttatagttaagttgtgggaggagatactttgtttaaattatgggagaagatacatatgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521593 |
ttattatggagtataattttgatacgcataaaatgatgattttatagttaagttgtgggaggagatactttgtttaaattatgggagaagatacatatgg |
36521494 |
T |
|
| Q |
116 |
tcgtgaccgtctgaacgctggtatttatagaggaataacaannnnnnnngtactcgcatgtttgttaaagtgtctcttttattttataaataagaaagaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521493 |
tcgtgaccgtctgaacgctggtatttatagaggaataacaattttttttgtactcgcatgtttgttaaagtgtctcttttattttataaataagaaagaa |
36521394 |
T |
|
| Q |
216 |
tgaaataatgaaagaaagatgaagagtaaaatacaagtatggtggattctagggtgagggatagtatatgaaaacaaatgaaagataattttgtt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521393 |
tgaaataatgaaagaaagatgaagagtaaaatacaagtaaggtggattctagggtgagggatagtatatgaaaacaaatgaaagataattttgtt |
36521299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University