View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_high_13 (Length: 309)
Name: NF20103_high_13
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6474965 - 6474726
Alignment:
| Q |
1 |
cccttaaactttaatctgtgttcaatcctctttactcacacactttcttctttcattaacatgtttgagaaaaattcagttcacaaacccattaacatat |
100 |
Q |
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| T |
6474965 |
cccttaaactttaatctgtgttcaatcctctttactcccacactttcttctttcattaacatgtttgagaaaaattcagttcacaaacccattaacatat |
6474866 |
T |
|
| Q |
101 |
agacagcttctcaaacattcaataatttgtgaaagtttataacttagttaaacttcccttaactagtttatagttcatgaatgtttgattgttgttagta |
200 |
Q |
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| T |
6474865 |
agacagcttctcaaacattcaataatttgtgaaagtttatagcttagttaaacttcccttaactagtttataggtcatgaatgtttgattgttgttagta |
6474766 |
T |
|
| Q |
201 |
gcatatgttgaagggtcacaaattttgagcgattatatat |
240 |
Q |
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| T |
6474765 |
gcatatgttgaagggtcacaaattttgaacgattatatat |
6474726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 6463423 - 6463532
Alignment:
| Q |
121 |
aataatttgtgaaagtttataacttagttaaacttcccttaactagtttatagttcatgaatgtttgattgttgttagtagc--atatgttgaagggtca |
218 |
Q |
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| T |
6463423 |
aataatttgtgaaagtttatagcttagttaaacttcccttaactagtttataggtcatgaatgtttgattgttgttagtagcttttatgttgaagggtca |
6463522 |
T |
|
| Q |
219 |
caaattttga |
228 |
Q |
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| T |
6463523 |
caaattttga |
6463532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 13036465 - 13036385
Alignment:
| Q |
83 |
acaaacccattaacatatagacagcttctcaaacattcaataatttgtgaaagtttataacttagttaaacttcccttaac |
163 |
Q |
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| T |
13036465 |
acaaaaccattaacatgtagacagtttctcaaatattcaataatttgtgaaaaagtatagcttagttaaacttcccttaac |
13036385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 6474893 - 6474947
Alignment:
| Q |
244 |
ttttctcaaacatgttcatgaaataagaaagtgtgtgagtaatgaggattgaaca |
298 |
Q |
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| T |
6474893 |
ttttctcaaacatgttaatgaaagaagaaagtgtgggagtaaagaggattgaaca |
6474947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 6495627 - 6495585
Alignment:
| Q |
121 |
aataatttgtgaaagtttataacttagttaaacttcccttaac |
163 |
Q |
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| T |
6495627 |
aataatttgtgaaagtttatagcttagctaaacttcccttaac |
6495585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 6498127 - 6498074
Alignment:
| Q |
72 |
aaattcagttcacaaacccattaacatatagacagcttctcaaacattcaataa |
125 |
Q |
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|||||||||||| ||| |||||||||||||| ||||| ||||||| |||||||| |
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| T |
6498127 |
aaattcagttcataaatccattaacatatagccagctactcaaactttcaataa |
6498074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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