View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_high_18 (Length: 238)
Name: NF20103_high_18
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 48258169 - 48257958
Alignment:
| Q |
18 |
caaaacctacatatagattgtttaattctatcacaaattccctcgaggaatcaaaaagcaacttataacataggtaggaatatcttggaacgttgtcctg |
117 |
Q |
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| T |
48258169 |
caaaacctacatatagattgtttaattctatcacaaattccctcgaggaatcaaaaagcaacttataacataggtaggaatatcttggaacgttgtcctg |
48258070 |
T |
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| Q |
118 |
attaaaacagccatactagagaaggataaatgtttttcctttcaccctctcaacttgcttcttatcatttccatgaggaaattgagaactatgttcttag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
48258069 |
attaaaacagccatactagagaaggataaatgtttttcctttcaccctctcaacttgcttcttatcatttcca---------tgaaaactttgttcttag |
48257979 |
T |
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| Q |
218 |
aatgacatatatgggtaggtg |
238 |
Q |
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||||||||||||||||||||| |
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| T |
48257978 |
aatgacatatatgggtaggtg |
48257958 |
T |
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