View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20103_high_19 (Length: 238)
Name: NF20103_high_19
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 10202952 - 10203170
Alignment:
| Q |
1 |
tcttactttatatacaagtaacagtaactagggttttatattctattgcatgcacactctaggttactatgcactctgattcttgtatatatactcattg |
100 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10202952 |
tcttacttgatatacaagtaacattcactagggttttatattctattgcatgcacactctaggttactatgcactctgattcttgtatatatactcattg |
10203051 |
T |
|
| Q |
101 |
taatcattctatcatcaataacaattcacttttattcattttctcttgtttcctaataacaacaatcaagttcacttctaagacggttctcaatcgcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10203052 |
taatcattctatcatcaataacaattcacttttattcattttctcttgtttcctaataacaacaatcaagttcacttctaagacggttctcaatcgcatg |
10203151 |
T |
|
| Q |
201 |
atccttactatgtgcatcc |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10203152 |
atccttactatgtgcatcc |
10203170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 27982877 - 27983023
Alignment:
| Q |
13 |
tacaagtaacagtaactagggttttatattctattgcatgcacactctaggttactatgcactctgattcttgtatatatactcattgtaatcattctat |
112 |
Q |
| |
|
|||||||||||| |||||||||||||||| || || ||| | | | |||||||| |||| || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27982877 |
tacaagtaacagatactagggttttatattttactgaatgtatattttaggttaccatgccctgagattcttgtatatatacacattgtaatcattctat |
27982976 |
T |
|
| Q |
113 |
catcaataacaattcacttttattcattttctcttgtttcctaataa |
159 |
Q |
| |
|
||||||| | ||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
27982977 |
catcaatgagaattcacatttattcattctttcttgtttcctaataa |
27983023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 928376 - 928497
Alignment:
| Q |
36 |
ttatattctattgcatgcacactctaggttactatgcactctgattcttgtatatatactcattgtaatcattctatcatcaataacaattcacttttat |
135 |
Q |
| |
|
|||||||||| ||||| ||| |||||||| |||||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
928376 |
ttatattctactgcataaacatactaggttatgatgcactctgattcatgtatatataccc-ttgtaatcattcaatcatcaataacaattcacttttac |
928474 |
T |
|
| Q |
136 |
tcattttctcttgtttcctaata |
158 |
Q |
| |
|
| ||||| ||||||||| ||||| |
|
|
| T |
928475 |
ttattttatcttgtttcataata |
928497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 30498179 - 30498324
Alignment:
| Q |
13 |
tacaagtaacagtaactagggttttatattctattgcatgcacactctaggttactatgcactctgattcttgtatatatactcattgtaatcattctat |
112 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||| |||||||| | | ||||||| ||||||| ||| ||||||||||||| |||||||||||||| || |
|
|
| T |
30498179 |
tacaagtaacagatactagggttctatacgctactgcatgcatagtttaggttatcatgcactgagatccttgtatatatacacattgtaatcattcaat |
30498278 |
T |
|
| Q |
113 |
catcaataacaattcacttttattcattttctcttgtttcctaata |
158 |
Q |
| |
|
||||||| | ||||||| ||| |||| | | ||||||||||||||| |
|
|
| T |
30498279 |
catcaatgagaattcacatttcttcactctttcttgtttcctaata |
30498324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University