View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_high_22 (Length: 227)
Name: NF20103_high_22
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39458234 - 39458014
Alignment:
| Q |
1 |
caaaatatattttaggtttagatcgatataaataatagatgtatcgtatgcatcttcctcaccttgccaaagatgatgtcgtctccctctcttaaaaaga |
100 |
Q |
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| T |
39458234 |
caaaatatattttaggtttagatcgatataaataatagatgtatcgtatgcatcttcctcaccttgccaaagatgatgtcgtctccctctcttaaaaaga |
39458135 |
T |
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| Q |
101 |
gaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgt |
200 |
Q |
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| T |
39458134 |
gaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttgaaatactttattttcttccaaccaaacttgttgt |
39458035 |
T |
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| Q |
201 |
aaccacaagcgtcctctcaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39458034 |
aaccacaagcgtcctctcaaa |
39458014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 39424091 - 39424234
Alignment:
| Q |
75 |
gatgtcgtctccctctcttaaaaagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactt |
174 |
Q |
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| T |
39424091 |
gatgtcgtcttcctcacataaaaagagaaggttgagaaaatcttccaag---gtagataggataagcgacctgccggattcaattctgtgtcacatactc |
39424187 |
T |
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| Q |
175 |
tattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaa |
221 |
Q |
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| T |
39424188 |
tattttcttccaaccaaacttgctgcaaccacaagtgtcctctcaaa |
39424234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 39437114 - 39437257
Alignment:
| Q |
75 |
gatgtcgtctccctctcttaaaaagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactt |
174 |
Q |
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| T |
39437114 |
gatgtcgtcttcctcacataaaaagagaaggttgagaaaatcttccaag---gtagataggattagcgacctaccggattcaattctgtgtcacatactc |
39437210 |
T |
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| Q |
175 |
tattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaa |
221 |
Q |
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| T |
39437211 |
tattttcttccaaccaaacttgctgcaaccacaagtgtcctctcaaa |
39437257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 39463687 - 39463544
Alignment:
| Q |
75 |
gatgtcgtctccctctcttaaaaagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactt |
174 |
Q |
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| T |
39463687 |
gatgtcgtattcctcacataaaaagagaaggttgagaaaatcttccaag---gtagataggattagcgacttgccggactcaattctcagccacatactc |
39463591 |
T |
|
| Q |
175 |
tattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaa |
221 |
Q |
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| T |
39463590 |
tattttcttccaaccaaacttgctgcaacgacaagcgttctctcaaa |
39463544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 48445119 - 48445194
Alignment:
| Q |
133 |
agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaa |
208 |
Q |
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| T |
48445119 |
agaattagcgacatgccggattcaatactcagtcatattctctcttttctcccaaccaaacttgctgtaaccacaa |
48445194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 38490615 - 38490527
Alignment:
| Q |
133 |
agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaa |
221 |
Q |
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| T |
38490615 |
agaattagcgacttgcctgattcgatactctgtcacattctctcttttctcccaaccaatcttgctttcatcacaagcttcctctcaaa |
38490527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 43098352 - 43098440
Alignment:
| Q |
133 |
agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaa |
221 |
Q |
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| T |
43098352 |
agaattagctatttgccagattcaattctgtgtcacattctctctttcgtcccaaccaaacttgcggcaatcacaagcgtcctctcaaa |
43098440 |
T |
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