View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_high_5 (Length: 476)
Name: NF20103_high_5
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_high_5 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 218 - 459
Target Start/End: Complemental strand, 12067 - 11829
Alignment:
| Q |
218 |
taagaatgtaatataactaattgaaatggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12067 |
taagaatgtaatataactaattgaaacggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
11968 |
T |
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| Q |
318 |
tgttgatcaagtcgatcttctcatatttttcaataa-cggtgctgataaacttgtgaatcatggacacttgattatgggtgcttgatggtcgaattcttt |
416 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
11967 |
tgttgatcaag----tcttctcatatttttcaataattggtgctgataaacttgcgaatcatggacactcgattctgggtgcttgatggtcgaattcttt |
11872 |
T |
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| Q |
417 |
atttgagtttatttgggaacctttcttcaaagaccattatggt |
459 |
Q |
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| T |
11871 |
atttgagtttatttgggaacctttctttaaagaccgttatggt |
11829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 218 - 459
Target Start/End: Complemental strand, 21367542 - 21367304
Alignment:
| Q |
218 |
taagaatgtaatataactaattgaaatggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21367542 |
taagaatgtaatataactaattgaaacggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
21367443 |
T |
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| Q |
318 |
tgttgatcaagtcgatcttctcatatttttcaataa-cggtgctgataaacttgtgaatcatggacacttgattatgggtgcttgatggtcgaattcttt |
416 |
Q |
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| T |
21367442 |
tgttgatcaag----tcttctcatatttttcaataattggtgctgataaacttgcgaatcatggacactcgattctgggtgcttgatggtcgaattcttt |
21367347 |
T |
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| Q |
417 |
atttgagtttatttgggaacctttcttcaaagaccattatggt |
459 |
Q |
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| T |
21367346 |
atttgagtttatttgggaacctttctttaaagaccgttatggt |
21367304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 21371168 - 21371003
Alignment:
| Q |
12 |
gaatattgttgtgaagaatgaagaaggagtgtgttttatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatag |
111 |
Q |
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| T |
21371168 |
gaatattattgtgaagaatgaagaaggagtgtgttgtatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatag |
21371069 |
T |
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| Q |
112 |
aaagatttaaactaattaatcttgattaattaacataatttaatccacttagctgcatctgactaa |
177 |
Q |
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| T |
21371068 |
aaagatttaaagtaattaatcttgattaattaacataagttaatccacttagctgcatctgactaa |
21371003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 21386389 - 21386554
Alignment:
| Q |
12 |
gaatattgttgtgaagaatgaagaaggagtgtgttttatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatag |
111 |
Q |
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| T |
21386389 |
gaatattattgtgaagaatgaagaaggagtgtgttgtatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatag |
21386488 |
T |
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| Q |
112 |
aaagatttaaactaattaatcttgattaattaacataatttaatccacttagctgcatctgactaa |
177 |
Q |
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| T |
21386489 |
aaagatttaaagtaattaatcttgattaattaacataagataatccacttcgccgcatctgactaa |
21386554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 33025748 - 33025715
Alignment:
| Q |
260 |
ttgaaattgctcatgataagggttggtttaacct |
293 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33025748 |
ttgaaattgctcatgataagggttggtttaacct |
33025715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 21371050 - 21371018
Alignment:
| Q |
187 |
atcttgactaattaacataagttaatccactta |
219 |
Q |
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| T |
21371050 |
atcttgattaattaacataagttaatccactta |
21371018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 218 - 459
Target Start/End: Original strand, 23901027 - 23901265
Alignment:
| Q |
218 |
taagaatgtaatataactaattgaaatggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23901027 |
taagaatgtaatataactaattgaaacggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
23901126 |
T |
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| Q |
318 |
tgttgatcaagtcgatcttctcatatttttcaataa-cggtgctgataaacttgtgaatcatggacacttgattatgggtgcttgatggtcgaattcttt |
416 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
23901127 |
tgttgatcaag----tcttctcatatttttcaataattggtgctgataaacttgcgaatcatggacactcgattctgggtgcttgatggtcgaattcttt |
23901222 |
T |
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| Q |
417 |
atttgagtttatttgggaacctttcttcaaagaccattatggt |
459 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
23901223 |
atttgagtttatttgggaacctttctttaaagaccgttatggt |
23901265 |
T |
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