View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_high_6 (Length: 462)
Name: NF20103_high_6
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_high_6 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 255 - 456
Target Start/End: Complemental strand, 38633335 - 38633134
Alignment:
| Q |
255 |
gagtttcatcattataacatgctattaaatagaaaatacctgtatttttctaacatttttatcaggcttttccccaaaccgtcctccctttgatgctttg |
354 |
Q |
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| T |
38633335 |
gagtttcatcgttataacatgctattaaatagaaaatagctatatttttctaacatttttatcaggcttttccccaaaccgtcctccctttgatgctttg |
38633236 |
T |
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| Q |
355 |
ttcatgaaattcaattcatcaagagccatatataaatccataagtatcttctctttactcgccacgcggtttctccgatccttttgaagatagtataatc |
454 |
Q |
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| T |
38633235 |
ttcatgaaattcaactcatcaagagccatatataaatccctaagtatcttctccttactcgccacgcggtttctccgttccttttgtagatagtgtaatc |
38633136 |
T |
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| Q |
455 |
ta |
456 |
Q |
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|| |
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| T |
38633135 |
ta |
38633134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 38633603 - 38633357
Alignment:
| Q |
18 |
aataccaaacacagaaactccaatcttcataatgagagaaagnnnnnnnnnncaaatctattaaattaccgnnnnnnnnagaacttctagtgatttgaac |
117 |
Q |
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| T |
38633603 |
aataccaaacacagaaactccaatcttcataatgaaagaaaaaaaaaaaaaacgaatctattaaattaccgtttttttcagaacttttagcgatttgaat |
38633504 |
T |
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| Q |
118 |
gaagcaacatctttctgttgaatgtttatagccctcagaatttgtttttcctcagccaaatttttgcaactatgcagcatcaaagaattcatagactgca |
217 |
Q |
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| T |
38633503 |
gaagcaacacctttctgttgaatgtttatatccctcagaatatttttttcctcggccaaatttttgcaactatgtagcatcacagaattcatagactaca |
38633404 |
T |
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| Q |
218 |
caaaaataatttgaaaaccagaacaaaataaatatacgagtttcatc |
264 |
Q |
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| T |
38633403 |
caaaaataatttgaaaaccagaacaatataaatatatgagtttcatc |
38633357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 107 - 393
Target Start/End: Complemental strand, 38637461 - 38637182
Alignment:
| Q |
107 |
gtgatttgaacgaagcaacatctttctgttgaatgtttatagccctcagaatttgtttttcctcagccaaatttttgcaactatgcagcatcaaagaatt |
206 |
Q |
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| T |
38637461 |
gtgatttgaatgaagcaacatctttctgcagaatctttatatccctcagaatttgtttctcttcggccaaacttttgctcctatgtagcttaaaataatt |
38637362 |
T |
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| Q |
207 |
catagactgcacaaaaataatttgaaaaccagaacaaaataaa-tatacgagtttcatcattataaca-tgctattaaatagaaaatacctgtatttttc |
304 |
Q |
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| T |
38637361 |
caaagact--acatagacgatttcaaaatcaaaacaacacaaaatatattaatttcatcatattaaaaattctattaaatag-------ctttatttttc |
38637271 |
T |
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| Q |
305 |
taacatttttatcaggcttttccccaaaccgtcctccctttgatgctttgttcatgaaattcaattcatcaagagccatatataaatcc |
393 |
Q |
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| T |
38637270 |
ttacatttttatcaagcttttccccgaaccattctccatttgctactttgtttatgaaattcaattgatcaagagtcatatacaaatcc |
38637182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 38690107 - 38690013
Alignment:
| Q |
127 |
tctttctgttgaatgtttatagccctcagaatttgtttttcctcagccaaatttttgcaactatgcagcatcaaagaattcatagactgcacaaa |
221 |
Q |
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| T |
38690107 |
tctttctgttgaatttttatatccctcagaatttgtttctcctcagccaaacttttgcttccatgtagcttcaaataactcaaagactacacaaa |
38690013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 38690152 - 38690119
Alignment:
| Q |
100 |
acttctagtgatttgaacgaagcaacatctttct |
133 |
Q |
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| T |
38690152 |
acttctagtgatttgaatgaagcaacatctttct |
38690119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 12449 - 12384
Alignment:
| Q |
112 |
ttgaacgaagcaacatctttctgttgaatgtttatagccctcagaatttgtttttcctcagccaaa |
177 |
Q |
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| T |
12449 |
ttgaatgaagcaacatctttctgttgaatctttatatctctcagaatttgtttttcttcacccaaa |
12384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 431
Target Start/End: Complemental strand, 12206 - 12138
Alignment:
| Q |
363 |
attcaattcatcaagagccatatataaatccataagtatcttctctttactcgccacgcggtttctccg |
431 |
Q |
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| T |
12206 |
attcaattcatcaagagccatattaaaatcccttagtattttccctttaatcgccacactgtttctccg |
12138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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