View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20103_high_7 (Length: 412)

Name: NF20103_high_7
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20103_high_7
NF20103_high_7
[»] chr4 (6 HSPs)
chr4 (21-401)||(41075644-41076028)
chr4 (149-212)||(42694703-42694766)
chr4 (151-218)||(41073182-41073249)
chr4 (308-387)||(42693854-42693932)
chr4 (101-142)||(41073303-41073344)
chr4 (263-300)||(42694492-42694529)
[»] chr7 (5 HSPs)
chr7 (265-327)||(45557435-45557497)
chr7 (267-327)||(40491650-40491710)
chr7 (265-327)||(25156270-25156332)
chr7 (263-327)||(17111913-17111977)
chr7 (264-324)||(40561714-40561774)
[»] scaffold0384 (1 HSPs)
scaffold0384 (21-69)||(3404-3451)
[»] chr8 (5 HSPs)
chr8 (264-327)||(32927961-32928024)
chr8 (263-308)||(9461510-9461555)
chr8 (264-327)||(26100099-26100162)
chr8 (275-308)||(5219199-5219232)
chr8 (267-315)||(7533869-7533917)
[»] scaffold0079 (1 HSPs)
scaffold0079 (21-69)||(5963-6010)
[»] chr3 (3 HSPs)
chr3 (263-327)||(31013086-31013150)
chr3 (150-196)||(39054247-39054293)
chr3 (263-327)||(31708192-31708256)
[»] chr5 (1 HSPs)
chr5 (101-139)||(29821955-29821993)
[»] chr2 (3 HSPs)
chr2 (264-326)||(16518847-16518909)
chr2 (263-319)||(680251-680307)
chr2 (267-319)||(1976825-1976877)
[»] chr1 (2 HSPs)
chr1 (264-302)||(30557571-30557609)
chr1 (263-327)||(34915134-34915198)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 21 - 401
Target Start/End: Original strand, 41075644 - 41076028
Alignment:
Q  21 tgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgtgttattgtctgtctaaatttcttttttggagatcaattttggggattaaaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   |||||| ||||||||    
T  41075644 tgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgtgttattgtctgtctaaatttcttttttgaattttt-ttttggagattaaaa 41075742  T
Q  121 tcaattctatttgaagctaataagttatcacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgtatggtttcg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41075743 tcaattctatttgaagctaataagttatcacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgtatggtttca 41075842  T
Q  221 g------gttcgtaaacaacaaacacacgttcatggccatcaaccgtgattcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctaca 314  Q
    |      |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| | |||||||||||    
T  41075843 gtttcaggttcgtaaacaacaaacacacgttcatggccatcaatcgtgatttagctcacttttatatgaatgtatcaaaaaacaaaccactttacctaca 41075942  T
Q  315 actcatttttagtttagattaaattctacaaaaccaatttacttcgaatcaatttttgtcaaatctcaaccaaacatacacaggttc 401  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  41075943 actcatttttag-ttagattaaattctacagaaccaatttacttcgaatcggtttttgtcaaatctcaaccaaacatacacaggttc 41076028  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 42694703 - 42694766
Alignment:
Q  149 cacttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgta 212  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  42694703 cacttgaaaaacacttctaatgtatctaaacttaaaaccaaacaccctatacttagtcaatgta 42694766  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 41073249 - 41073182
Alignment:
Q  151 cttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccctatacttagtctatgtatggttt 218  Q
    ||||||||||||||||||||||||  |||||||||||||||||  || || ||| |||||| ||||||    
T  41073249 cttgaaaaacacttctaatgcatcctaacttaaaaccaaacacaataaacatagcctatgtttggttt 41073182  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 387
Target Start/End: Complemental strand, 42693932 - 42693854
Alignment:
Q  308 acctacaactcatttttagtttagattaaattctacaaaaccaatttacttcgaatcaatttttgtcaaatctcaaccaa 387  Q
    |||||||||||| |||||||| ||| |||||| |||| |  ||||||||| | |||||||| ||||| ||||||||||||    
T  42693932 acctacaactcaattttagtt-agaataaattttacagagtcaatttactccaaatcaattcttgtctaatctcaaccaa 42693854  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 41073303 - 41073344
Alignment:
Q  101 atcaattttggggattaaaatcaattctatttgaagctaata 142  Q
    ||||||||||| || ||||| |||||||||||||||||||||    
T  41073303 atcaattttggtgagtaaaaacaattctatttgaagctaata 41073344  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 42694529 - 42694492
Alignment:
Q  263 attcaactcacttttatatgaatgtatcaaaaaacaaa 300  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  42694529 attcaactcacttttacatgaatatatcaaaaaacaaa 42694492  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 45557435 - 45557497
Alignment:
Q  265 tcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 327  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||||||| ||||||| |||||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagt 45557497  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 40491650 - 40491710
Alignment:
Q  267 aactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 327  Q
    |||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||| |||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagt 40491710  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 25156270 - 25156332
Alignment:
Q  265 tcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 327  Q
    |||||||||||||||||||||||||  ||| |||||||  |||| || |||||||||||||||    
T  25156270 tcaactcacttttatatgaatgtattcaaacacaaatcattttatcttcaactcatttttagt 25156332  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 17111913 - 17111977
Alignment:
Q  263 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 327  Q
    |||| ||||| ||||| ||||||| ||| ||| ||||||| |||||||||||| ||| |||||||    
T  17111913 attctactcatttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagt 17111977  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 40561774 - 40561714
Alignment:
Q  264 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcattttt 324  Q
    ||||||||||||||| ||||||||||| ||| | ||||| |||||| | ||||||| ||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttt 40561714  T

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Target: scaffold0384 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 3451 - 3404
Alignment:
Q  21 tgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgt 69  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  3451 tgtgttggtgggttat-gttatgtgtaacttatgttgcctgaaaactgt 3404  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 32927961 - 32928024
Alignment:
Q  264 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 327  Q
    ||||||||||||||| ||||||||||| ||| ||||||| |||| ||| ||||||| |||||||    
T  32927961 ttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagt 32928024  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 9461555 - 9461510
Alignment:
Q  263 attcaactcacttttatatgaatgtatcaaaaaacaaatcgcttta 308  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||    
T  9461555 attcaactcacttttatatgaatgtatccaaacacaaatcacttta 9461510  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 26100162 - 26100099
Alignment:
Q  264 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 327  Q
    ||||||||||||||| || |||| ||| ||| |||||| ||||||||| |||||| ||||||||    
T  26100162 ttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcgtttttagt 26100099  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 5219199 - 5219232
Alignment:
Q  275 tttatatgaatgtatcaaaaaacaaatcgcttta 308  Q
    |||||||||||||||||||||||||||| |||||    
T  5219199 tttatatgaatgtatcaaaaaacaaatcacttta 5219232  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 7533869 - 7533917
Alignment:
Q  267 aactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaa 315  Q
    |||||||||||||||||||||| | ||| ||| ||| ||||||||||||    
T  7533869 aactcacttttatatgaatgtacccaaacacagatcactttacctacaa 7533917  T

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Target: scaffold0079 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 6010 - 5963
Alignment:
Q  21 tgtgttggtgggtttttgttatgtgtaacttatgttgcctgaaaactgt 69  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||||    
T  6010 tgtgttggtgggttat-gttatgcgtaacttatgttgcctgaaaactgt 5963  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 31013086 - 31013150
Alignment:
Q  263 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 327  Q
    ||||||||||||| || ||||||| ||| ||| ||||||| ||||| |||||||||| |||||||    
T  31013086 attcaactcacttgtacatgaatgcatccaaacacaaatcactttatctacaactcacttttagt 31013150  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 39054247 - 39054293
Alignment:
Q  150 acttgaaaaacacttctaatgcatctaaacttaaaaccaaacaccct 196  Q
    |||||||||||||||||||  ||||||||| |||||||||| |||||    
T  39054247 acttgaaaaacacttctaagacatctaaacataaaaccaaaaaccct 39054293  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 31708256 - 31708192
Alignment:
Q  263 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 327  Q
    |||||||||||||||| ||||||||||| ||| ||||| | ||||| |  ||||||| |||||||    
T  31708256 attcaactcacttttacatgaatgtatccaaacacaaaccactttatcagcaactcacttttagt 31708192  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 29821955 - 29821993
Alignment:
Q  101 atcaattttggggattaaaatcaattctatttgaagcta 139  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  29821955 atcaattttggagattaaaaacaattctatttgaagcta 29821993  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 16518847 - 16518909
Alignment:
Q  264 ttcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttag 326  Q
    ||||||||||||||| ||||||||||| ||| |||||||  ||||||  ||||||| ||||||    
T  16518847 ttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 680307 - 680251
Alignment:
Q  263 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactca 319  Q
    |||||||||||||||| ||||||||||  ||| ||||| | |||||||| |||||||    
T  680307 attcaactcacttttacatgaatgtatgcaaacacaaaacactttaccttcaactca 680251  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 1976877 - 1976825
Alignment:
Q  267 aactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactca 319  Q
    |||||||||||| ||||||||||| ||| | || ||||||||||| |||||||    
T  1976877 aactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactca 1976825  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 30557571 - 30557609
Alignment:
Q  264 ttcaactcacttttatatgaatgtatcaaaaaacaaatc 302  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  30557571 ttcaactcacttttatatgaatgtatccaaacacaaatc 30557609  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 34915134 - 34915198
Alignment:
Q  263 attcaactcacttttatatgaatgtatcaaaaaacaaatcgctttacctacaactcatttttagt 327  Q
    |||||||||||||||| ||||||||||  ||| | |||||  ||||||| ||||||| |||||||    
T  34915134 attcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttagt 34915198  T

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