View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_high_9 (Length: 344)
Name: NF20103_high_9
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 194283 - 194594
Alignment:
| Q |
18 |
aaatccacctgtctcatgtttgattaataatcctttcattctatgggtttctgatgttgctcaatccctttccctcccttctgctttgctttggattcaa |
117 |
Q |
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| T |
194283 |
aaatccacctgtctcatgtttgattaacaatcctttcattccatgggtttctgatgttgctcaatccctttccctcccttctgctttgctttggattcaa |
194382 |
T |
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| Q |
118 |
tcatgtgcttccttctcttcttactatcattactatcataaattagtttctttcccttctcaatcccatccccatattcatgttcagctgccatgtatgc |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
194383 |
tcatgtgcttccttctctacttactatcattactatcataaattagtttctttcccttctcaatcccatccccatattcatgttcagctgccatgtatgc |
194482 |
T |
|
| Q |
218 |
ctctgttgaattatgatcaagtccctagcttcttgtatcccaccactccctatccatttcttagaagggcgatcctgggacagttccaaaacttgcataa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
194483 |
ctctgttgaattatgatcaagtccctagcttcttgtatcccaccactccctatccatttcttagaagggcgatcttgggacagttccaaaacttgcataa |
194582 |
T |
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| Q |
318 |
atctttctgtat |
329 |
Q |
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| |||||||||| |
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| T |
194583 |
acctttctgtat |
194594 |
T |
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