View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20103_low_1 (Length: 667)

Name: NF20103_low_1
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20103_low_1
NF20103_low_1
[»] chr1 (6 HSPs)
chr1 (197-334)||(52140746-52140883)
chr1 (19-200)||(52140542-52140714)
chr1 (31-152)||(52130956-52131077)
chr1 (436-497)||(6923510-6923571)
chr1 (340-383)||(52140901-52140944)
chr1 (235-267)||(52131249-52131281)
[»] chr8 (4 HSPs)
chr8 (19-200)||(17525002-17525174)
chr8 (209-311)||(17524854-17524955)
chr8 (315-439)||(17524437-17524571)
chr8 (437-474)||(16367881-16367918)
[»] chr4 (2 HSPs)
chr4 (453-661)||(37615638-37615847)
chr4 (438-474)||(17558824-17558860)
[»] chr6 (1 HSPs)
chr6 (514-661)||(22083598-22083733)
[»] chr3 (2 HSPs)
chr3 (434-475)||(52130754-52130795)
chr3 (438-474)||(5561552-5561588)
[»] chr7 (1 HSPs)
chr7 (439-475)||(24763319-24763355)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 197 - 334
Target Start/End: Original strand, 52140746 - 52140883
Alignment:
Q  197 tagtggaagatgtatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct 296  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140746 tagtggaagatgtatagaaaattgtaaaagtaagcttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct 52140845  T
Q  297 aatttaattcgatgtatttatgtacaaacagttgccac 334  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52140846 aatttaattcgatgtatttatgtacaaacagttgccac 52140883  T

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Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 52140542 - 52140714
Alignment:
Q  19 cttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttgtcaa 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52140542 cttacaacagtaccaaaagacaagcgaaacatgtttaagagagagtttatggcagctttggatgcttcagcgaatagaactttgttttgctttttgtcaa 52140641  T
Q  119 acagaagcttaagggtcactttggttgaagaagatgaagaagaagccatattgaaagataatgcattaacagagaggctagt 200  Q
     ||||||||||||||| ||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140642 ccagaagcttaagggttactttggt---------tgaagaagaagccatattgaaagataatgcattaacagagaggctagt 52140714  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 52130956 - 52131077
Alignment:
Q  31 ccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttgtcaaacagaagcttaa 130  Q
    |||||||||||  |||||||||||||||||||||||| ||| ||||| |||||||| || || |||||||||||||||||| |||||| | |||||||||    
T  52130956 ccaaaagacaagtgaaacatgtttaagagagagtctacggcagcttttgatgcttctgcaaacagaactttgttttgctttgtgtcaaccggaagcttaa 52131055  T
Q  131 gggtcactttggttgaagaaga 152  Q
    |||||| |||||| ||||||||    
T  52131056 gggtcattttggtggaagaaga 52131077  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 497
Target Start/End: Complemental strand, 6923571 - 6923510
Alignment:
Q  436 taaactagattgtctacccgtgctgccgcatgggtcataatttgctaaaaatattagttgaa 497  Q
    |||||||||| |||||||||||| || ||| ||||||||  | |||||||||||||||||||    
T  6923571 taaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaa 6923510  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 52140901 - 52140944
Alignment:
Q  340 agcttgattttgagttctcttatcctcctctgcaattggccaac 383  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||    
T  52140901 agcttaattttgagttctcttaatctcctctgcaattggccaac 52140944  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 52131249 - 52131281
Alignment:
Q  235 gtatttattacttagagattggaaattggaatg 267  Q
    |||||||||||| ||||||||||||||||||||    
T  52131249 gtatttattactaagagattggaaattggaatg 52131281  T

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Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 17525174 - 17525002
Alignment:
Q  19 cttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttgtcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||| || || | |||||||||||||||| ||||||    
T  17525174 cttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcagcttgtgatgattcggcaaacataactttgttttgctttgtgtcaa 17525075  T
Q  119 acagaagcttaagggtcactttggttgaagaagatgaagaagaagccatattgaaagataatgcattaacagagaggctagt 200  Q
     ||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  17525074 ccagaagcctaagggtcactttggttgaag---------aagaagccatattgaaagataatgcattaacagagaggctagt 17525002  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 17524955 - 17524854
Alignment:
Q  209 tatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgctaatttaattcga 308  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  17524955 tatagaaaattgtaaaagtaactt-ggtatttattacttagagattggaaattggaatgtatgaagtcctactggccacggtattgctaatttaattcga 17524857  T
Q  309 tgt 311  Q
    |||    
T  17524856 tgt 17524854  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 17524571 - 17524437
Alignment:
Q  315 tatgtacaaacagttgccacttacgag---------cttgattttgagttctcttatcctcctctgcaattggccaa-catttgagcaagagaaacttgg 404  Q
    |||||||||||||||||||||||||||         ||| ||||||||||||||||  ||||||||||||||||||| |||| |||||||||||||||||    
T  17524571 tatgtacaaacagttgccacttacgagtaattaaagcttaattttgagttctcttaatctcctctgcaattggccaaacattggagcaagagaaacttgg 17524472  T
Q  405 tagaataccgcgatggttcacacaaatttgttaaa 439  Q
    |||| |||||||||| ||||||||||||| |||||    
T  17524471 tagagtaccgcgatgtttcacacaaatttcttaaa 17524437  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 16367918 - 16367881
Alignment:
Q  437 aaactagattgtctacccgtgctgccgcatgggtcata 474  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcata 16367881  T

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Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 453 - 661
Target Start/End: Original strand, 37615638 - 37615847
Alignment:
Q  453 ccgtgctgccgcatgggtcataatttgctaaaaatattagttgaaagcaatc---atatatccgataaaattaatatatagttactcaatgtaccaaatt 549  Q
    ||||||||| ||| |||||||||||| |||||| |||||||||||||| ||    |||||||| |||||||||||||||||||||||||| |||  ||||    
T  37615638 ccgtgctgctgcacgggtcataatttactaaaactattagttgaaagccattgttatatatccaataaaattaatatatagttactcaatatactgaatt 37615737  T
Q  550 gttctgactaaatgcgattaattaattgacgtatgatcatcttacataggttaaaaaattat--agatatgatagacatacataaccataattgtccggc 647  Q
    ||||||||  |||||||||||||    |||||| |||| ||||||||||||||||||| |    |||||||| ||||||||||| |||||||||| ||||    
T  37615738 gttctgacgtaatgcgattaatt----gacgtacgatcgtcttacataggttaaaaaaattcgaagatatgagagacatacatagccataattgttcggc 37615833  T
Q  648 ctatgctactccac 661  Q
    ||||| ||||||||    
T  37615834 ctatgttactccac 37615847  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 17558824 - 17558860
Alignment:
Q  438 aactagattgtctacccgtgctgccgcatgggtcata 474  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcata 17558860  T

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Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 514 - 661
Target Start/End: Complemental strand, 22083733 - 22083598
Alignment:
Q  514 ataaaattaatatatagttactcaatgtaccaaattgttctgactaaatgcgattaattaattgacgtatgatcatcttacataggttaaaaaattatag 613  Q
    |||||||||| |||||||||||||||||||  ||||||||||||  |||||||||    |||| |||||||||| ||||||||||||  |        ||    
T  22083733 ataaaattaagatatagttactcaatgtactgaattgttctgacgtaatgcgatt----aattcacgtatgatcgtcttacataggtcga--------ag 22083646  T
Q  614 atatgatagacatacataaccataattgtccggcctatgctactccac 661  Q
    |||||| ||||||||||| |||||| ||| ||||||||| ||||||||    
T  22083645 atatgagagacatacatagccataactgttcggcctatgttactccac 22083598  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 475
Target Start/End: Complemental strand, 52130795 - 52130754
Alignment:
Q  434 gttaaactagattgtctacccgtgctgccgcatgggtcataa 475  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  52130795 gttagactagattgtctacccgtgctgccgcacgggtcataa 52130754  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 5561552 - 5561588
Alignment:
Q  438 aactagattgtctacccgtgctgccgcatgggtcata 474  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5561552 aactagatcgtctacccgtgctgccgcacgggtcata 5561588  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 24763355 - 24763319
Alignment:
Q  439 actagattgtctacccgtgctgccgcatgggtcataa 475  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24763355 actagattgtctacccgtgctgccgcacgggtcataa 24763319  T

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