View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20103_low_10 (Length: 339)
Name: NF20103_low_10
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 43871539 - 43871229
Alignment:
| Q |
10 |
gcaaagggcgagggagatgagcgagcgtagcaacctttacgttaggcacaactgtttgttgtggggtgcaggggcgatagcccatggtacggttcagggg |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43871539 |
gcaaagggcgagggagatgagcgagtgtagcaacctgtacgttaggcacaactgtttgttgtggggtgcaggggcgatagcccatggtacggttcagggg |
43871440 |
T |
|
| Q |
110 |
tatttttgtagtttgaaccgtagtattatgggtattgcttgtaacgctgtaaaccctaatcgttcaagtaataatacgaaactacagctgctttgttgtt |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43871439 |
tatttttgtagtttgaaccatagtattatgtgtattgcttgtaacgctgtaaaccctaatcgttcaagtaataatacgaaactacagctgctttgttgtt |
43871340 |
T |
|
| Q |
210 |
gcaaacgtagacacacttgggtgaactgcgtaaagaaatgatcatgttcattgtcttgtgatttatggtttccttactcttatgttactagttgttatgt |
309 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43871339 |
gcaaacatagacacacttgggtgaactgcgtaaagaaatgatcatgttcattgtcttgtgatttatggtttccttactcttatgttactagttgttatgt |
43871240 |
T |
|
| Q |
310 |
aacacattctt |
320 |
Q |
| |
|
||||||||||| |
|
|
| T |
43871239 |
aacacattctt |
43871229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 15066004 - 15065951
Alignment:
| Q |
148 |
ttgtaacgctgtaaaccctaatcgttcaagtaataatacgaaactacagctgct |
201 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
15066004 |
ttgtaacattgtaaaccctaatcattcaagtaataatacgaaactacaactgct |
15065951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 14813953 - 14813886
Alignment:
| Q |
236 |
tgcgtaaagaaatgatcatgttcattgtcttgtgatttatggtttccttactcttatgttactagttg |
303 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||||| |||| ||| |||| |||||||||||| |
|
|
| T |
14813953 |
tgcgtaaacaaatgattgtgttcattgtcttgcgatttattatttctttaatcttctgttactagttg |
14813886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 15260948 - 15260881
Alignment:
| Q |
236 |
tgcgtaaagaaatgatcatgttcattgtcttgtgatttatggtttccttactcttatgttactagttg |
303 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||||| |||| ||| |||| |||||||||||| |
|
|
| T |
15260948 |
tgcgtaaacaaatgattgtgttcattgtcttgcgatttattatttctttaatcttctgttactagttg |
15260881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 42363815 - 42363863
Alignment:
| Q |
147 |
cttgtaacgctgtaaaccctaatcgttcaagtaataatacgaaactaca |
195 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
42363815 |
cttgtaacactataaaccctaatcattcaagtaataatacagaactaca |
42363863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University