View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20103_low_11 (Length: 337)

Name: NF20103_low_11
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20103_low_11
NF20103_low_11
[»] chr8 (2 HSPs)
chr8 (1-330)||(26494596-26494925)
chr8 (146-330)||(26506641-26506825)
[»] chr2 (9 HSPs)
chr2 (88-201)||(2327134-2327247)
chr2 (146-210)||(2330840-2330904)
chr2 (88-192)||(2351164-2351268)
chr2 (88-210)||(2303570-2303692)
chr2 (158-210)||(2321272-2321324)
chr2 (245-319)||(2293848-2293922)
chr2 (5-33)||(2294113-2294141)
chr2 (5-33)||(2310444-2310472)
chr2 (5-33)||(2321428-2321456)
[»] chr5 (2 HSPs)
chr5 (245-312)||(15176593-15176660)
chr5 (1-33)||(15176370-15176402)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 26494925 - 26494596
Alignment:
Q  1 ccctgctccaaacggcatcatctttatctcttttatacccctaacatcaaatgcgtcaaattcgtttctattttttgcatcttttagaaacctctctggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494925 ccctgctccaaacggcatcatctttatctcttttatacccctaacatcaaatgcgtcaaattcgtttctattttttgcatcttttagaaacctctctggc 26494826  T
Q  101 ttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaa 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494825 ttaaacaccgtaggatcctcccaaaccgttggatctaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaa 26494726  T
Q  201 caatatcctccgtcactacacgtggaattgtgtagtgagttggaggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctacaa 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26494725 caatatcctccgtcactacacgtggaattgtgtagtgagtaggaggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctccaa 26494626  T
Q  301 atcttcctctctcacttccctttcttctct 330  Q
    |||||||||||||||||||||||| |||||    
T  26494625 atcttcctctctcacttccctttcctctct 26494596  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 146 - 330
Target Start/End: Complemental strand, 26506825 - 26506641
Alignment:
Q  146 tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagttggag 245  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| || ||||  | |||||| |||||| || ||||||||  ||||||||  ||||    
T  26506825 tctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggtcactgcatgtggaattaagtagtgagaaggag 26506726  T
Q  246 gatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctacaaatcttcctctctcacttccctttcttctct 330  Q
    | || |||||||||||||| |||||||| ||||| | ||| || || || | ||||||||||||| | ||||| ||||| |||||    
T  26506725 ggtggcgccttaacccttctaaaatcactgccttaagataaggtaacttttccaaatcttcctcttttacttctctttcctctct 26506641  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 2327247 - 2327134
Alignment:
Q  88 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 187  Q
    |||||| |||||||||||| || | ||||||||||||||    ||||  || || || ||||||||||| |||||||| ||||||||||||||||||||     
T  2327247 aaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaa 2327148  T
Q  188 taaccattcaaaac 201  Q
    ||||||||||||||    
T  2327147 taaccattcaaaac 2327134  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 2330904 - 2330840
Alignment:
Q  146 tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctc 210  Q
    ||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||| | ||||||    
T  2330904 tctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctc 2330840  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 2351268 - 2351164
Alignment:
Q  88 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 187  Q
    ||||||||||||||||||| || | ||||||||||||||    ||||   | || || ||||||||||||||||| || ||||||||||||||||||||     
T  2351268 aaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaa 2351169  T
Q  188 taacc 192  Q
    |||||    
T  2351168 taacc 2351164  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 2303692 - 2303570
Alignment:
Q  88 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 187  Q
    |||||| |||||||||||| || | ||||||||||||||    ||||   | || || || |||| ||| |||||||| ||||||||||||||||||||     
T  2303692 aaacctttctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaa 2303593  T
Q  188 taaccattcaaaacaatatcctc 210  Q
    ||||| |||||||| | ||||||    
T  2303592 taaccgttcaaaaccacatcctc 2303570  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 2321324 - 2321272
Alignment:
Q  158 aaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctc 210  Q
    |||||||| |||||||||||||||||||| ||||| |||||||| | ||||||    
T  2321324 aaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctc 2321272  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 2293922 - 2293848
Alignment:
Q  245 ggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctacaaatcttcctctctcacttcc 319  Q
    ||||||||||| ||||||||||||| ||||  |||||||||  | | ||||| ||| ||||||||| ||||||||    
T  2293922 ggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcacttcc 2293848  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 2294141 - 2294113
Alignment:
Q  5 gctccaaacggcatcatctttatctcttt 33  Q
    |||||||||||||||||||||||||||||    
T  2294141 gctccaaacggcatcatctttatctcttt 2294113  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 2310472 - 2310444
Alignment:
Q  5 gctccaaacggcatcatctttatctcttt 33  Q
    |||||||||||||||||||||||||||||    
T  2310472 gctccaaacggcatcatctttatctcttt 2310444  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 2321456 - 2321428
Alignment:
Q  5 gctccaaacggcatcatctttatctcttt 33  Q
    |||||||||||||||||||||||||||||    
T  2321456 gctccaaacggcatcatctttatctcttt 2321428  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 15176593 - 15176660
Alignment:
Q  245 ggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctacaaatcttcctctct 312  Q
    ||||||||||||| |||||||||||| ||||| || | |||||||| ||| | ||||||||| |||||    
T  15176593 ggatgacgccttagcccttccaaaattacagctttaagatatggcatttttttcaaatcttcttctct 15176660  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15176370 - 15176402
Alignment:
Q  1 ccctgctccaaacggcatcatctttatctcttt 33  Q
    |||||||||||| ||||||||||||||||||||    
T  15176370 ccctgctccaaatggcatcatctttatctcttt 15176402  T

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