View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_low_14 (Length: 269)
Name: NF20103_low_14
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 27636692 - 27636578
Alignment:
| Q |
140 |
ctaacctcgaattaaaaaggaagaatgttctgtgcataggtggttttctgtttgcagcttcgagaaagatgcatcagaaactggcaatggacacaatgtt |
239 |
Q |
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| T |
27636692 |
ctaacctcaaattaaaaaggaagaatgttctgtgcataggtggttttctgtttgcagcttcgagaaagatgcatcagaaactggcaatggacacaatgtt |
27636593 |
T |
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| Q |
240 |
caggagagaaatgac |
254 |
Q |
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| T |
27636592 |
caggagagaagtgac |
27636578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 27636818 - 27636747
Alignment:
| Q |
14 |
aatattgtgcctacaaattcatctttaaggtgaataagtgaggtgtcttgattcgaacttatgtcccgctac |
85 |
Q |
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| T |
27636818 |
aatattgtgcctacaaattcatctttaaagtgaataagtgaggtgtcttgattcgaacttatgtcccgctac |
27636747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 27639852 - 27639785
Alignment:
| Q |
18 |
ttgtgcctacaaattcatctttaaggtgaataagtgaggtgtcttgattcgaacttatgtcccgctac |
85 |
Q |
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| T |
27639852 |
ttgtgcctacaaattcatctttaaggtgaataagtggggtgtcttggttcgaacctctgtcccgctac |
27639785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 34485990 - 34485942
Alignment:
| Q |
180 |
tggttttctgtttgcagcttcgagaaagatgcatcagaaactggcaatg |
228 |
Q |
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| T |
34485990 |
tggttttctgtttgcagcttcgagaaagatgcatcagaaactggcaatg |
34485942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 34484647 - 34484573
Alignment:
| Q |
180 |
tggttttctgtttgcagcttcgagaaagatgcatcagaaactggcaatggacacaatgttcaggagagaaatgac |
254 |
Q |
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| T |
34484647 |
tggttttctatttgcagcttcgagaaagatgcaccggaaactggcaatgaacaatatgttcaggagagaagtgac |
34484573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 34475057 - 34474983
Alignment:
| Q |
180 |
tggttttctgtttgcagcttcgagaaagatgcatcagaaactggcaatggacacaatgttcaggagagaaatgac |
254 |
Q |
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| T |
34475057 |
tggttttctgtttgcagctttgagaaagatgcaccagataccggcaatgaacaagatgttcaagagagaagtgac |
34474983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 34797233 - 34797203
Alignment:
| Q |
29 |
aattcatctttaaggtgaataagtgaggtgt |
59 |
Q |
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| T |
34797233 |
aattcatctttaaggtgaataagtgaggtgt |
34797203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 52202262 - 52202291
Alignment:
| Q |
28 |
aaattcatctttaaggtgaataagtgaggt |
57 |
Q |
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| T |
52202262 |
aaattcatctttaaggtgaataagtgaggt |
52202291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 7496020 - 7495988
Alignment:
| Q |
29 |
aattcatctttaaggtgaataagtgaggtgtct |
61 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
7496020 |
aattcatcttcaaggtgaataagtgaggtgtct |
7495988 |
T |
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