View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20103_low_16 (Length: 251)
Name: NF20103_low_16
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_low_16 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 29707183 - 29706946
Alignment:
| Q |
14 |
aatatgaatcaatgaaaggttaaagtgttttcagaactaaggtaaatttgcaatgtcgacgctgcaagttgcaactatcggctttactttgacctagcgt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29707183 |
aatatgaatcaatgaaaggttaaagtgttttcagaactaaggtaaatttgcaatgtcgacgctgcaagttgcaactatcggctttactttgaccttgcgt |
29707084 |
T |
|
| Q |
114 |
cttactatttcaagtgtgcactaaaaaatgtacgaagtgtctctttggaactacgatgagttcgccattttcacattccaaggctgctcacggcacaagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29707083 |
cttactatttcaagtgtgcactaaaaaatgtacgaagtgtctctttggaactacgatgagttcgccattttcacattccaaggctgctcacggcacaagt |
29706984 |
T |
|
| Q |
214 |
tacaacaagtagtagctaagcttcatactgaacgcaca |
251 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
29706983 |
tacaactagtagtagctaagcttcatattgaacgcaca |
29706946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University