View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_low_2 (Length: 621)
Name: NF20103_low_2
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 13 - 601
Target Start/End: Complemental strand, 36651509 - 36650921
Alignment:
| Q |
13 |
agcagagagataaaccgcttgagaaagaaagtcttagtcacgagttcattttgaccgaaagctatctcatgaaaagctccattcagttagagactacatc |
112 |
Q |
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| T |
36651509 |
agcacagagataaaccgcttgagaaagaaagtcttagtcacgagttcattttgaccgaaagctatctcatgaaaagctccattcagttagagactacatc |
36651410 |
T |
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| Q |
113 |
tgcaattgtggcaaggtctggaatgaagtcacgcaaaaccattgaatatctgtacaagaaattgatgagtgtaaatggggtgtatgaggctgaattgaat |
212 |
Q |
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| T |
36651409 |
tgcaattgtggcaagatctggaatgaagtcacgcgaaaccattgaatatctgtacaagaaattgatgagtgtaaatggggtgtatgaggctgaattgaat |
36651310 |
T |
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| Q |
213 |
tacatacatcagcgtctcctcgttaaaactgacatgtaacatgtgttcctcaagggatatctaatggttatgagttatagcttggcggttgtgtctaatg |
312 |
Q |
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| T |
36651309 |
tacatacatcagcgtctcctcgttaaaaccgacatgaaacatgtgttcctcaagggatatctaatggttatgagttatagcttggcagttgcgtctaatg |
36651210 |
T |
|
| Q |
313 |
tggtggagtgtggatccaatgataacacttgtgtgaaggttaaatacaagaactttgttgataaggtggactacttgatgaagaatagcattgttgttga |
412 |
Q |
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| T |
36651209 |
tggtggagtgtggatgcaatgatatcacttgtgtgaaggttaaatacaagaactttggtgataaggtggactacttgatgaagaataacattgttgttga |
36651110 |
T |
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| Q |
413 |
ttcttgtcactttaccaatgaggagatgtgggtgttggttgaaatgtgtgatgagtatccaaaaaagcgttttggcgaagccaacatttataatagtctg |
512 |
Q |
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| T |
36651109 |
ttcttgtcacttcaccaatgaggagatgtgggtgttggttgaaatgtgtgatgagtatccaaaaaagcgttttggcgaagccaacatttataatagtttg |
36651010 |
T |
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| Q |
513 |
atattggctaaggatgatcttgttgtctttagtaccaacgaagaaaatcccagtttggttggctcgcagcccatgtatggcaacccgga |
601 |
Q |
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| T |
36651009 |
atattggctaaggatgatcttgttgtctttagtaccaacgaagaaaatgccagtttggtcggctcgcagcccatgtatggcaacccgga |
36650921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 405 - 535
Target Start/End: Original strand, 36642317 - 36642447
Alignment:
| Q |
405 |
gttgttgattcttgtcactttaccaatgaggagatgtgggtgttggttgaaatgtgtgatgagtatccaaaaaagcgttttggcgaagccaacatttata |
504 |
Q |
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| T |
36642317 |
gttgttgattcttgtcactttactcatgaggagatatcgctgctgattgaaatgtgtgttgagtatccaaaacagcattttggcaaagccaacgtttata |
36642416 |
T |
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| Q |
505 |
atagtctgatattggctaaggatgatcttgt |
535 |
Q |
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| | |||| |||||||||||||||||||||| |
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| T |
36642417 |
acaatctggtattggctaaggatgatcttgt |
36642447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 36642181 - 36642257
Alignment:
| Q |
215 |
catacatcagcgtctcctcgttaaaactgacatgtaacatgtgttcctcaagggatatctaatggttatgagttata |
291 |
Q |
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||||||| |||||||||||| || | || ||||| |||||||||||||| |||||||| |||||||||||||||| |
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| T |
36642181 |
catacattagcgtctcctcgctagacctaacatgaggcatgtgttcctcaaaggatatctcatggttatgagttata |
36642257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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