View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_low_20 (Length: 238)
Name: NF20103_low_20
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29706837 - 29706616
Alignment:
| Q |
1 |
ttctttccagcaggtcggttcctaatgttgcatctcttaggaacagtgatagcaatagcaggattaatcttagcttgttttgcaagaggtgacaaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29706837 |
ttctttccagcaggtcggttcctaatgttgcatctcttaggaacagtgatagcaatagcaggattaatcttagcttgttttgcaagaggtgacaaaagaa |
29706738 |
T |
|
| Q |
101 |
ctgaacaaagacatcttggagaagttctaagcaaagcaccaactctagcacaacaaactggtggaacttttgccctaacattacgtacagcacccaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29706737 |
ctgaacaaagacatcttggagaagttctaagcaaagcaccaactctagcacaacaaactggtggaacttttgccctaacattacgtacagcacccaaaca |
29706638 |
T |
|
| Q |
201 |
tggacttagactagcagctgct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
29706637 |
tggacttagactagcagctgct |
29706616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29725050 - 29724829
Alignment:
| Q |
1 |
ttctttccagcaggtcggttcctaatgttgcatctcttaggaacagtgatagcaatagcaggattaatcttagcttgttttgcaagaggtgacaaaagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29725050 |
ttctttccagcaggtcggttcctaatgttgcatctcttaggaacagtgatagcaatagcaggattaatcttagcttgttttgcaagaggtgacaaaagaa |
29724951 |
T |
|
| Q |
101 |
ctgaacaaagacatcttggagaagttctaagcaaagcaccaactctagcacaacaaactggtggaacttttgccctaacattacgtacagcacccaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29724950 |
ctgaacaaagacatcttggagaagttctaagcaaagcaccaactctagcacaacaaactggtggaacttttgccctaacattacgtacagcacccaaaca |
29724851 |
T |
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| Q |
201 |
tggacttagactagcagctgct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
29724850 |
tggacttagactagcagctgct |
29724829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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