View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20103_low_3 (Length: 508)
Name: NF20103_low_3
Description: NF20103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20103_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 4 - 503
Target Start/End: Complemental strand, 41830649 - 41830147
Alignment:
| Q |
4 |
ctacatgagtatgcctatgttcacttcatcatcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacacgttgcct |
103 |
Q |
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| T |
41830649 |
ctacatgagtatgcctatgttcacttcatcatcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacacgttgcct |
41830550 |
T |
|
| Q |
104 |
atgatggatcatagtggatacttcaacaatacagttactacaatgccatgcttttcgtcacaaaatcatgaagttgaaattaaaggttcttatttagaaa |
203 |
Q |
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| T |
41830549 |
gtgatggatcatagtggatacttcaacaatacagttactacaatgccatgcttttcgtcacaaaatcacgaagttgaaattaaaggttcttatttagaaa |
41830450 |
T |
|
| Q |
204 |
atggtgtgtttgggagtgtaaatattggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattattttgatga |
303 |
Q |
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| T |
41830449 |
atggtgtgtttgggagtgtaaatattggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattattttgatga |
41830350 |
T |
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| Q |
304 |
cataaagataaacaatatgcttagtaactgcaatattattgaaagcaataataatgaaattgaaagtaggggt---gtagtggagaatttatttcaagaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41830349 |
cataaagataaacaatatgcttagtaactgcaatattattgaaagcaataataataaaattgaaagtaggggtgaagtagtggagaatttatttcaagaa |
41830250 |
T |
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| Q |
401 |
caattcaacttgggagaatgggattttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatctgtgct |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
41830249 |
caattcaacttgggagaatgggattttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatttgtgtt |
41830150 |
T |
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| Q |
501 |
cct |
503 |
Q |
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| T |
41830149 |
cct |
41830147 |
T |
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