View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20104_high_3 (Length: 238)

Name: NF20104_high_3
Description: NF20104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20104_high_3
NF20104_high_3
[»] chr7 (23 HSPs)
chr7 (1-221)||(8546611-8546831)
chr7 (1-221)||(8538740-8538960)
chr7 (31-221)||(8582629-8582819)
chr7 (70-221)||(8572595-8572746)
chr7 (70-221)||(8577294-8577445)
chr7 (33-163)||(7876838-7876968)
chr7 (16-157)||(8647653-8647793)
chr7 (29-157)||(8602698-8602826)
chr7 (18-133)||(8568791-8568906)
chr7 (33-160)||(8635506-8635633)
chr7 (29-157)||(8591362-8591490)
chr7 (143-221)||(8560773-8560851)
chr7 (78-157)||(6790423-6790502)
chr7 (70-157)||(13332160-13332247)
chr7 (108-166)||(27829346-27829404)
chr7 (78-163)||(10493005-10493090)
chr7 (78-157)||(3148384-3148463)
chr7 (78-157)||(8668478-8668557)
chr7 (111-160)||(17261438-17261487)
chr7 (65-145)||(8660244-8660324)
chr7 (44-160)||(29576996-29577112)
chr7 (33-88)||(8639789-8639844)
chr7 (65-145)||(1302311-1302391)
[»] chr8 (1 HSPs)
chr8 (31-217)||(12529834-12530020)
[»] chr2 (8 HSPs)
chr2 (108-220)||(7543320-7543432)
chr2 (70-170)||(12244400-12244500)
chr2 (108-163)||(12000376-12000431)
chr2 (78-160)||(12257921-12258003)
chr2 (78-154)||(43626333-43626409)
chr2 (78-160)||(16656607-16656689)
chr2 (108-220)||(14705506-14705618)
chr2 (108-160)||(12235841-12235893)
[»] chr4 (4 HSPs)
chr4 (78-157)||(9323074-9323153)
chr4 (78-157)||(9377553-9377632)
chr4 (78-163)||(35133467-35133552)
chr4 (109-157)||(9335046-9335094)
[»] chr5 (2 HSPs)
chr5 (70-157)||(28220952-28221039)
chr5 (78-157)||(42554197-42554276)
[»] chr1 (2 HSPs)
chr1 (78-166)||(4677541-4677629)
chr1 (78-154)||(15596072-15596148)
[»] chr6 (1 HSPs)
chr6 (78-145)||(11278609-11278676)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8546611 - 8546831
Alignment:
Q  1 ttaaacagtgctgcaacaaaagaataagtaaattaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttg 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8546611 ttaaacagtgctggaacaaaagaataagtaaattaccaaatacagtgttgattgggttagaagaagcctgatttttggcagcatcaccaatcagcctttg 8546710  T
Q  101 ggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||     
T  8546711 ggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctcctgccatactccaacacat 8546810  T
Q  201 gagtaagtcgtgccaaggtca 221  Q
    |||||||||||||||||||||    
T  8546811 gagtaagtcgtgccaaggtca 8546831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8538740 - 8538960
Alignment:
Q  1 ttaaacagtgctgcaacaaaagaataagtaaattaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttg 100  Q
    ||||||||||||| ||||||||||||| | |||||||||| ||||||||  |||||||||| |||||  ||||||||||||||||||||||||  | |||    
T  8538740 ttaaacagtgctggaacaaaagaataaatgaattaccaaagacagtgtttgttgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttg 8538839  T
Q  101 ggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacac 200  Q
     |||||  | ||| |||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||||| || | |||||||||||     
T  8538840 agaattactaaaaccaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacat 8538939  T
Q  201 gagtaagtcgtgccaaggtca 221  Q
    ||||| |||||||||||||||    
T  8538940 gagtaggtcgtgccaaggtca 8538960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 8582629 - 8582819
Alignment:
Q  31 aattaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgt 130  Q
    |||||||| | | ||||||| |||||||||||| |||  ||||||||||||||||||||||||  ||||| ||||| || ||||||||||||||||||||    
T  8582629 aattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgt 8582728  T
Q  131 tgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtca 221  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| || | ||||||||||| ||||| || || |||||||||    
T  8582729 tgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgccacactccaacacatgagtaggttgtaccaaggtca 8582819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 8572595 - 8572746
Alignment:
Q  70 gatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacg 169  Q
    ||||||||||||||||||| ||||  ||||| ||||| || |||||||||||||| || |||||| |||||||||| |||||||| |||||||| |||||    
T  8572595 gatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtgtatgatttcaacacg 8572694  T
Q  170 atcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtca 221  Q
    ||| || |||||| || | ||||||||||| |||||||||||||||||||||    
T  8572695 atcattttgctcctgccacactccaacacatgagtaagtcgtgccaaggtca 8572746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 8577294 - 8577445
Alignment:
Q  70 gatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacg 169  Q
    |||||||||||||||| |||||||  ||||| ||||| || ||||||||||||||||| || ||| ||||||||||||||||||| || ||||| |||||    
T  8577294 gatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttctacacg 8577393  T
Q  170 atcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtca 221  Q
    |||||| || ||  || ||||||||||||| |||||||||||||||||||||    
T  8577394 atcgttttgttcatgccatactccaacacatgagtaagtcgtgccaaggtca 8577445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 7876968 - 7876838
Alignment:
Q  33 ttaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttg 132  Q
    |||||||| |||||||||  ||||||||| | |||| |||||||||||||||||||||||| ||||||   ||| |||||||||||| ||||||||||||    
T  7876968 ttaccaaagacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttg 7876869  T
Q  133 ttttgtttccttgatcattgtgaatgatttc 163  Q
    || |||| ||||| ||||||||||| |||||    
T  7876868 ttctgttgccttgttcattgtgaataatttc 7876838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 8647653 - 8647793
Alignment:
Q  16 acaaaagaataagtaaattaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagc 115  Q
    ||||||||||| | || |||||||| ||||||||| | |||||||||| |||| ||||||| || ||||||||||||| ||||||   ||  ||||||||    
T  8647653 acaaaagaata-gaaatttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagc 8647751  T
Q  116 aacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  8647752 aacaaaagaaggtgtagttctgtttccttgatcattgtgaat 8647793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 8602698 - 8602826
Alignment:
Q  29 taaattaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggt 128  Q
    |||||||||||| | |||||||| ||||||||||| |||| ||||||||||||||||||| |||| |||||    ||  || ||||||||| |||||||     
T  8602698 taaattaccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaagga 8602797  T
Q  129 gttgttttgtttccttgatcattgtgaat 157  Q
    || ||| ||||||||||||||||||||||    
T  8602798 gtagttctgtttccttgatcattgtgaat 8602826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 8568791 - 8568906
Alignment:
Q  18 aaaagaataagtaaattaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaa 117  Q
    ||||||| || | ||||||||||   ||||||| |||| ||||||| |||  ||||||||||||||||||||||||  ||||| || || ||||||||||    
T  8568791 aaaagaaaaaatgaattaccaaaggtagtgttggttggattagaagcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaa 8568890  T
Q  118 cacaagaaggtgttgt 133  Q
    ||||||||||||||||    
T  8568891 cacaagaaggtgttgt 8568906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 8635633 - 8635506
Alignment:
Q  33 ttaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttg 132  Q
    |||||||| ||||| |||  ||||||||| |||||| | |||||||||||||||||||||| |||||| |  |  |||||||||||||||||||||||      
T  8635633 ttaccaaagacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtga 8635534  T
Q  133 ttttgtttccttgatcattgtgaatgat 160  Q
    || |||| ||||| |||||||| |||||    
T  8635533 ttctgttcccttgctcattgtggatgat 8635506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 8591362 - 8591490
Alignment:
Q  29 taaattaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggt 128  Q
    ||||||||| || ||||||||   ||||||||||| |||| | ||||| |||||||||||||||| ||||||   ||| || ||||||||| ||||||||    
T  8591362 taaattaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggt 8591461  T
Q  129 gttgttttgtttccttgatcattgtgaat 157  Q
    ||  || | ||||||||||||||||||||    
T  8591462 gtaattctatttccttgatcattgtgaat 8591490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 8560773 - 8560851
Alignment:
Q  143 ttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaaggtca 221  Q
    |||||||||||| |||||||||||||||| ||| |||||| || ||||||||||||| ||||| || || |||||||||    
T  8560773 ttgatcattgtgtatgatttccacacgattgttttgctcctgccatactccaacacatgagtaggttgttccaaggtca 8560851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 6790423 - 6790502
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    ||||||||||| |||| |||||||  ||  |||||||||||| |||||||||| |||||||| ||||| |||||||||||    
T  6790423 gcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaat 6790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 13332247 - 13332160
Alignment:
Q  70 gatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    |||| |||||||||||||||||||  |||||   |||  ||||||||||| |||||||||| ||| | ||||||||||||||||||||    
T  13332247 gattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaat 13332160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 27829404 - 27829346
Alignment:
Q  108 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccac 166  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||| || |||||    
T  27829404 gtgaaagcaacacaagaaggtgttgtcttgttgccttgttcattgtgaataatctccac 27829346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 10493090 - 10493005
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttc 163  Q
    ||||||||||| |||| ||||||   |||  ||||||||||| |||||||||| ||| | |||||||||||||||||||| |||||    
T  10493090 gcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatttc 10493005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 3148384 - 3148463
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    ||||||||||||| || ||||||   ||  |||||||||||| |||||||||| |||||||| ||||| |||||||||||    
T  3148384 gcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaat 3148463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 8668478 - 8668557
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    |||||||| ||||||| ||||||   |||  ||||||||||| ||||||||||| ||  |||||||||||||||||||||    
T  8668478 gcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgttattcggtttccttgatcattgtgaat 8668557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 17261438 - 17261487
Alignment:
Q  111 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 160  Q
    ||||||||| ||||||| ||  ||||||||||||||||||||||||||||    
T  17261438 aaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgat 17261487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 8660244 - 8660324
Alignment:
Q  65 agcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttg 145  Q
    |||| |||| || |||||||||||||||| ||||||    |  |||||||||||| | |||||||||||||||||||||||    
T  8660244 agcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttg 8660324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 29577112 - 29576996
Alignment:
Q  44 agtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttcct 143  Q
    ||||||| ||||||| || | |||| ||||||| ||||||| |||||| | |||| | ||||  |||||||| |||  ||||||||| ||| | || |||    
T  29577112 agtgttggttgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctattgcct 29577013  T
Q  144 tgatcattgtgaatgat 160  Q
    ||||||||||| |||||    
T  29577012 tgatcattgtggatgat 29576996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 8639844 - 8639789
Alignment:
Q  33 ttaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcacc 88  Q
    |||||||| ||||||||| | ||||||||||||||| |||| || |||||||||||    
T  8639844 ttaccaaagacagtgttggtagggttagaagaagcctgattcttagcagcatcacc 8639789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 1302311 - 1302391
Alignment:
Q  65 agcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttg 145  Q
    |||| |||| || ||||||||||| |||| ||||||   ||  |||||||||||| |||| |||||||||||||| |||||    
T  1302311 agcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttg 1302391  T

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Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 12529834 - 12530020
Alignment:
Q  31 aattaccaaatacagtgttgattgggttagaagaagcccgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgt 130  Q
    |||||||||| | ||||||| | |||||||| |||||  ||||||||||||||| ||||||||  || || ||||| || ||||||||||||||||||||    
T  12529834 aattaccaaagatagtgttggtggggttagaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgt 12529933  T
Q  131 tgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaagtcgtgccaag 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||  | |||||  || ||||||||||||| |||||||| ||||||||    
T  12529934 tgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaag 12530020  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 7543320 - 7543432
Alignment:
Q  108 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaag 207  Q
    |||||||||||| |||||||||||||| |||| ||||| || |||||||||||||| || |||| ||  || ||| || ||||| ||||||| ||||| |    
T  7543320 gtgaaagcaacaaaagaaggtgttgttctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacg 7543419  T
Q  208 tcgtgccaaggtc 220  Q
    | |||||||||||    
T  7543420 ttgtgccaaggtc 7543432  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 12244500 - 12244400
Alignment:
Q  70 gatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacg 169  Q
    ||||||| |||||||||||||| | ||||||    |  ||||||||||||||||||||||||||| |||| || ||||| |||||||||||||| |||||    
T  12244500 gatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttcaacacg 12244401  T
Q  170 a 170  Q
    |    
T  12244400 a 12244400  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 12000376 - 12000431
Alignment:
Q  108 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttc 163  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||    
T  12000376 gtgaaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgatttc 12000431  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 12258003 - 12257921
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 160  Q
    |||||||||||||||| ||||||    || || ||||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  12258003 gcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgat 12257921  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 43626333 - 43626409
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 154  Q
    |||||||||||||||| |||||||   || ||||||| |||| |||||||||| ||| |||||||||| ||||||||    
T  43626333 gcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtg 43626409  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 16656689 - 16656607
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 160  Q
    ||||||||||| |||| ||||||   ||  |||||||||||| |||||||||||||| ||||||| || |||||||| |||||    
T  16656689 gcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgat 16656607  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 14705506 - 14705618
Alignment:
Q  108 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctccagctatactccaacacacgagtaag 207  Q
    |||||||||||| ||||||| |||||| | || |||||||| |||||||||||||| || ||||  |  || ||| || ||||| ||||||| ||||| |    
T  14705506 gtgaaagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacg 14705605  T
Q  208 tcgtgccaaggtc 220  Q
    | || ||||||||    
T  14705606 ttgtaccaaggtc 14705618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 12235841 - 12235893
Alignment:
Q  108 gtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 160  Q
    |||||||||||| ||||||| |||||| | || |||||||| |||||||||||    
T  12235841 gtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgtgaatgat 12235893  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 9323153 - 9323074
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    |||||||||||||||| ||||||   |||  ||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  9323153 gcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaat 9323074  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 9377632 - 9377553
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    |||||||||||||||| ||||||   |||  ||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  9377632 gcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaat 9377553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 35133467 - 35133552
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttc 163  Q
    ||||||||||| |||| ||||||    || |||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||    
T  35133467 gcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatttc 35133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 9335094 - 9335046
Alignment:
Q  109 tgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  9335094 tgaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaat 9335046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 28220952 - 28221039
Alignment:
Q  70 gatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    ||||||| |||||||| ||||||| |||||    ||  |||||||||||| ||||||| ||||||||||| |||||||||||||||||    
T  28220952 gatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaat 28221039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 42554276 - 42554197
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 157  Q
    |||||||||||||||| |||||    ||  || ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  42554276 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaat 42554197  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 4677629 - 4677541
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccac 166  Q
    ||||||| |||||||| ||||||   ||  || ||||||||| ||||||||||||||||||| ||||| ||||||| ||| || |||||    
T  4677629 gcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccac 4677541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 15596072 - 15596148
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 154  Q
    |||||||||||||||| ||||||   ||| ||||||| |||| ||||||||||  || |||||||||| ||||||||    
T  15596072 gcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtg 15596148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 11278609 - 11278676
Alignment:
Q  78 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttg 145  Q
    ||||||||||||||||  ||||  || ||| |||| ||||||||||||||||||||| |||| |||||    
T  11278609 gcagcatcaccaatcattctttcagagtttttgaatgcaacacaagaaggtgttgttctgttcccttg 11278676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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