View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20104_low_1 (Length: 456)

Name: NF20104_low_1
Description: NF20104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20104_low_1
NF20104_low_1
[»] chr1 (4 HSPs)
chr1 (15-441)||(49546753-49547182)
chr1 (362-406)||(32123584-32123628)
chr1 (58-121)||(49443886-49443948)
chr1 (350-391)||(34141638-34141679)
[»] chr3 (4 HSPs)
chr3 (362-405)||(21777206-21777249)
chr3 (368-406)||(42668172-42668210)
chr3 (357-402)||(35586173-35586218)
chr3 (355-406)||(42157733-42157784)
[»] chr5 (4 HSPs)
chr5 (355-405)||(1175862-1175912)
chr5 (355-405)||(12150688-12150738)
chr5 (339-408)||(13839473-13839540)
chr5 (356-402)||(33740020-33740066)
[»] chr8 (2 HSPs)
chr8 (350-401)||(32874844-32874894)
chr8 (362-405)||(39418173-39418216)
[»] chr7 (3 HSPs)
chr7 (363-406)||(13858445-13858488)
chr7 (355-404)||(7181389-7181438)
chr7 (337-405)||(45471832-45471900)
[»] chr4 (2 HSPs)
chr4 (350-404)||(56439290-56439344)
chr4 (355-406)||(34713068-34713117)
[»] chr2 (2 HSPs)
chr2 (350-404)||(5193176-5193229)
chr2 (350-400)||(38216438-38216488)
[»] chr6 (1 HSPs)
chr6 (350-402)||(6695406-6695458)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 441
Target Start/End: Original strand, 49546753 - 49547182
Alignment:
Q  15 atttcttccttaggtttaatggataatgagccnnnnnnnntatatgaactgaattaggaggaggatctgttaaaagaaaaggacaaatgaggaatcctga 114  Q
    |||||||| |||||||||||||||||||||||         |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  49546753 atttcttctttaggtttaatggataatgagccaaaaaaaaaatatgagctgaattaggaggaggatctgttaaaagaaaaagacaaatgaggaatcatga 49546852  T
Q  115 cataatgattacaatgtgggagtctcttgnnnnnnnc-ttatgatgatttattctt--aggcattgtttgtgattttggaggggagtgaatgactttggg 211  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  49546853 cataatgattacaatgtgggagtctctttttttttttgttatgatgatttattcttttaggcattgtttgtgattttggaggggagtgaatggctttggg 49546952  T
Q  212 taaaaaaggaggaaagggaatggctttgaatagggggcttgtttttcattgcaacagaaaattccctcaaaatgggggaactaaaaatattgtactaaag 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  49546953 taaaaaaggaggaaagggaatggctttgaatagggggcttgtttttcattgcaacagaaaatccccttaaaatgggggaactaaaaatattgtactaaag 49547052  T
Q  312 agggtttcgtgaaatctatgttgtgtaataatacttccaaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactatnnn 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  49547053 agggtttcgtgaaatctatgttgtgtaataatacttccaaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactataaa 49547152  T
Q  412 nnnnntgtgcaagatttctccaatttcccc 441  Q
         |||| ||||||||||||||||||||    
T  49547153 aaaaatgtggaagatttctccaatttcccc 49547182  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 32123584 - 32123628
Alignment:
Q  362 tatattaatgataaacattcatttatcattatctacaaaaacact 406  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  32123584 tatattaatgataaacattcatttatcattctttacaaaaacact 32123628  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 49443886 - 49443948
Alignment:
Q  58 atgaactgaattaggaggaggatctgttaaaagaaaaggacaaatgaggaatcctgacataatg 121  Q
    |||| |||||| ||||||||||||||||  ||||||| || |||||||||||||| ||||||||    
T  49443886 atgagctgaatgaggaggaggatctgttggaagaaaaaga-aaatgaggaatcctaacataatg 49443948  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 34141638 - 34141679
Alignment:
Q  350 aaaatttaaaagtatattaatgataaacattcatttatcatt 391  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||    
T  34141638 aaaatttaaaaatatattaatcataaacattaatttatcatt 34141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 21777249 - 21777206
Alignment:
Q  362 tatattaatgataaacattcatttatcattatctacaaaaacac 405  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  21777249 tatattaatgataaacattcatttatcattctctacaaaaacac 21777206  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 42668172 - 42668210
Alignment:
Q  368 aatgataaacattcatttatcattatctacaaaaacact 406  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42668172 aatgataaacattcatttatcattatctacaaaaacact 42668210  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 35586218 - 35586173
Alignment:
Q  357 aaaagtatattaatgataaacattcatttatcattatctacaaaaa 402  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  35586218 aaaaatatattaatgataaactttcatttatcattctctacaaaaa 35586173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 42157784 - 42157733
Alignment:
Q  355 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacact 406  Q
    |||||| ||||| |||||||||||||||||||||||| ||| ||||| ||||    
T  42157784 ttaaaaatatatgaatgataaacattcatttatcattctctgcaaaagcact 42157733  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 1175912 - 1175862
Alignment:
Q  355 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 405  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  1175912 ttaaaaatatattaatcataaacattcatttatcattctctacaaaaacac 1175862  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 12150688 - 12150738
Alignment:
Q  355 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 405  Q
    |||||| ||||||||| ||||  ||||||||||||||||||||||||||||    
T  12150688 ttaaaaatatattaatcataagtattcatttatcattatctacaaaaacac 12150738  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 13839540 - 13839473
Alignment:
Q  339 ataatacttccaaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactat 408  Q
    ||||||||  ||||| ||||||  |||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  13839540 ataatactctcaaaaattaaaa--atattaatcataaatattcatttatcattctctacaaaaccactat 13839473  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 33740066 - 33740020
Alignment:
Q  356 taaaagtatattaatgataaacattcatttatcattatctacaaaaa 402  Q
    ||||| ||||||||| ||||||||| ||||||||||||||| |||||    
T  33740066 taaaattatattaattataaacattgatttatcattatctaaaaaaa 33740020  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 401
Target Start/End: Original strand, 32874844 - 32874894
Alignment:
Q  350 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaa 401  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  32874844 aaaatttaaaa-tatattaatcataaacattcatttttcattatctacaaaa 32874894  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 39418173 - 39418216
Alignment:
Q  362 tatattaatgataaacattcatttatcattatctacaaaaacac 405  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||    
T  39418173 tatattaatcataaacattcatttatcattccctacaaaaacac 39418216  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 13858445 - 13858488
Alignment:
Q  363 atattaatgataaacattcatttatcattatctacaaaaacact 406  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  13858445 atattaatcataagcattcatttatcattatctacaaaaacact 13858488  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 7181438 - 7181389
Alignment:
Q  355 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 404  Q
    |||||| ||||||||| |||| ||||| ||||||||| ||||||||||||    
T  7181438 ttaaaaatatattaatcataagcattcttttatcattctctacaaaaaca 7181389  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 405
Target Start/End: Complemental strand, 45471900 - 45471832
Alignment:
Q  337 taataatacttccaaaatttaaaagtatattaatgataaaca-ttcatttatcattatctacaaaaacac 405  Q
    ||||||||||  ||||||| |||| |||||||||||||| |  ||||||||| |||||||||||||||||    
T  45471900 taataatactctcaaaattaaaaa-tatattaatgataagctgttcatttattattatctacaaaaacac 45471832  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 56439344 - 56439290
Alignment:
Q  350 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 404  Q
    |||| |||||| |||||||||||| ||||||||| ||||||| ||||||| ||||    
T  56439344 aaaaattaaaaatatattaatgattaacattcatctatcattctctacaataaca 56439290  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 34713068 - 34713117
Alignment:
Q  355 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacact 406  Q
    |||||| ||||||||| ||||||||||||||||||   ||||||||||||||    
T  34713068 ttaaaaatatattaatcataaacattcatttatca--ctctacaaaaacact 34713117  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 5193176 - 5193229
Alignment:
Q  350 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 404  Q
    ||||||||||| ||||||||| |||||||||||||||| ||| | ||||||||||    
T  5193176 aaaatttaaaa-tatattaatcataaacattcatttattattctgtacaaaaaca 5193229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 38216488 - 38216438
Alignment:
Q  350 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaa 400  Q
    |||| |||||| ||||||||| |||||||||||| ||||||| ||||||||    
T  38216488 aaaaattaaaaatatattaatcataaacattcatctatcattctctacaaa 38216438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 6695406 - 6695458
Alignment:
Q  350 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaa 402  Q
    |||||| |||| ||||||||| |||| ||||||||||||||| |||| |||||    
T  6695406 aaaattaaaaattatattaattataagcattcatttatcattctctaaaaaaa 6695458  T

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