View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20104_low_2 (Length: 431)

Name: NF20104_low_2
Description: NF20104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20104_low_2
NF20104_low_2
[»] chr7 (20 HSPs)
chr7 (1-413)||(8546058-8546471)
chr7 (245-413)||(8576752-8576920)
chr7 (245-410)||(8582129-8582294)
chr7 (244-413)||(8570737-8570906)
chr7 (244-405)||(8559767-8559928)
chr7 (244-413)||(29577242-29577411)
chr7 (244-323)||(7877306-7877385)
chr7 (245-408)||(8585280-8585443)
chr7 (245-323)||(8602490-8602568)
chr7 (244-413)||(29581414-29581583)
chr7 (244-404)||(8667854-8668014)
chr7 (244-323)||(8538552-8538631)
chr7 (246-347)||(3147764-3147865)
chr7 (244-404)||(8635916-8636076)
chr7 (246-409)||(8654880-8655043)
chr7 (245-299)||(8382450-8382504)
chr7 (245-387)||(1301916-1302058)
chr7 (245-323)||(8610433-8610511)
chr7 (258-347)||(8671217-8671306)
chr7 (246-347)||(10493949-10494050)
[»] chr8 (1 HSPs)
chr8 (244-413)||(12528930-12529099)
[»] chr2 (1 HSPs)
chr2 (245-382)||(16661566-16661703)
[»] chr4 (3 HSPs)
chr4 (305-404)||(9335525-9335624)
chr4 (245-347)||(35132938-35133040)
chr4 (267-327)||(9337586-9337646)
[»] chr5 (1 HSPs)
chr5 (164-224)||(43537560-43537620)
[»] chr1 (1 HSPs)
chr1 (287-413)||(15595465-15595588)


Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 8546471 - 8546058
Alignment:
Q  1 catgggtttgatatactcatatagttaataattgtgctagataaaagatagaaggcaaactagaaaaaatgttttttcagaaaccataacaactatgttt 100  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546471 catgggtttgatatactcata--gttaataattgtgctagataaaagatagaaggcaaactagaaaaaatgttttttcagaaaccataacaactatgttt 8546374  T
Q  101 taccattttcaaaacttccaaaaatgtcaaatatgttacaaaaattgtagaagaga---acaagtgaaatattgaatctatgctctcatgtgtttattag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  8546373 taccattttcaaaacttccaaaaatgtcaaatatgttacaaaaattgtagaagagaatgacaagtgaaatattgaatctatgctctcatgtgtttattag 8546274  T
Q  198 ttgatatgaaaatgaaaataggaagtaaatgtgcccttannnnnnngcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaat 297  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  8546273 ttgatatgaaaatgaaaataggaagtaaatgtgcccttttttttttgcagatgcaaagaggttaattggaaggaaatatagtgattcctttgttcagaat 8546174  T
Q  298 gatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaag 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546173 gatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaag 8546074  T
Q  398 aaatatcatctgtgat 413  Q
    ||||||||||||||||    
T  8546073 aaatatcatctgtgat 8546058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 245 - 413
Target Start/End: Complemental strand, 8576920 - 8576752
Alignment:
Q  245 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 344  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||   || ||||||||||||||||||||| |||||  |||||||||    
T  8576920 cagatacaaagaggttaattggaaggaaatatagtgattccattgttcagaaggattgtcttttgtggccctttaaggtcattgccggtactaatgacaa 8576821  T
Q  345 accgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgat 413  Q
    |||||||||  ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||    
T  8576820 accgacaatcgttgtgaactacaaaggtgaggaaaaacgctttgttgctgaagaaatatcatctgtgat 8576752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 245 - 410
Target Start/End: Complemental strand, 8582294 - 8582129
Alignment:
Q  245 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 344  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| || ||| |   |||||||||||| |||||||   | |||| |||||||||    
T  8582294 cagatgcaaagaggttaattggaaggaaatatagtgattccattgttcaaaaggatatcaagttgtggcccttcaaggtcaccgcaggtgctaatgacaa 8582195  T
Q  345 accgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgt 410  Q
    |||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  8582194 accgacaatcgttgtgaactacaagggtaaggaaaaacactttcttgctgaagaaatatcatctgt 8582129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 244 - 413
Target Start/End: Complemental strand, 8570906 - 8570737
Alignment:
Q  244 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 343  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||| |||||||  |||| ||| |||||||||||||||||||| ||||||| |||  |||    
T  8570906 gcagatgtaaagaggttaattggaaggaagtatagtgattccatcgttcagatggatcgacttttgtggccctttaaggtcatctccggtgctaacaaca 8570807  T
Q  344 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgat 413  Q
    |||| |||||  ||||||| |||| |||| ||||||| |  ||||| |||||||||||||||||||||||    
T  8570806 aaccaacaatcattgtgaagtacatgggtaaggaaaaacgttttgtagctgaagaaatatcatctgtgat 8570737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 405
Target Start/End: Complemental strand, 8559928 - 8559767
Alignment:
Q  244 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 343  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| || || | |||| |||||||||||||||||||||||||  | || | ||||||||    
T  8559928 gcagatgcaaagaggttaattggaaggaaatacagtgattccatagtccaaagtgatgtactgttgtggccctttaaggtcatcgctggcgataatgaca 8559829  T
Q  344 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatca 405  Q
    |||| ||  | |||||||| |||| |||  ||||||||||  ||||||| ||||||||||||    
T  8559828 aaccaacggtccttgtgaaatacaggggcaaggaaaagcatcttgttgccgaagaaatatca 8559767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 413
Target Start/End: Original strand, 29577242 - 29577411
Alignment:
Q  244 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 343  Q
    |||||||| |||| |||||||||||||||||  |||||||||||| ||| ||| ||| ||  |||||||||||||||||||||| | || | | ||||||    
T  29577242 gcagatgcgaagaggttaattggaaggaaattcagtgattccattattcggaaagatataaagttgtggccctttaaggtcattcctggagctgatgaca 29577341  T
Q  344 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgat 413  Q
    | || |  || ||||| || ||||||||  | || |||  |||||||||||| |||||||| ||| ||||    
T  29577342 atcccaagatccttgttaagtacaagggcaaagagaagtgctttgttgctgaggaaatatcgtctatgat 29577411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 7877306 - 7877385
Alignment:
Q  244 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggt 323  Q
    ||||||||||||| ||| ||||||||||||||||| |||||  || ||||||||||| | ||||||||||| ||||||||    
T  7877306 gcagatgcaaagaggttgattggaaggaaatatagcgattctgttattcagaatgatattctgttgtggccatttaaggt 7877385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 408
Target Start/End: Original strand, 8585280 - 8585443
Alignment:
Q  245 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 344  Q
    ||||||| |||| ||||||||| ||||| | ||||||| || ||||||| |||||| || |||||||||| || ||||| || || ||||||||||||||    
T  8585280 cagatgccaagaggttaattggtaggaagtttagtgatcccgttgttcaaaatgatataatgttgtggccattcaaggttatctctggtgttaatgacaa 8585379  T
Q  345 accgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatct 408  Q
    ||| |  |||  ||| || ||||||||| | |||||| || |   |||||| ||||||||||||    
T  8585380 acctatgattactgttaagtacaagggtcaagaaaagaacctatgtgctgaggaaatatcatct 8585443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 8602568 - 8602490
Alignment:
Q  245 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggt 323  Q
    |||||||||||| |||||||||||||||||||||||||||  |  ||||||||||  ||| ||||||||| ||||||||    
T  8602568 cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagaatgacatacggttgtggccatttaaggt 8602490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 413
Target Start/End: Original strand, 29581414 - 29581583
Alignment:
Q  244 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 343  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||| ||||| ||||| ||   |||||||||||||||||  || | ||   | ||||||    
T  29581414 gcagatgcaaagaggttaatcggaagaaaatatagtgattctattattcaggatgatataaatttgtggccctttaaggtagttgctggcactgatgaca 29581513  T
Q  344 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgat 413  Q
    | || |  || ||||| || ||||||||||| || |||   ||||||||||| |||||||||||| ||||    
T  29581514 atcccatgatccttgttaagtacaagggtgaagagaagaggtttgttgctgaggaaatatcatctatgat 29581583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 404
Target Start/End: Complemental strand, 8668014 - 8667854
Alignment:
Q  244 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 343  Q
    |||||||| |||| ||||||||| ||||| | ||||||  || ||||||| |  ||| || |||||||||| || ||||| ||||| |||||||||||||    
T  8668014 gcagatgctaagaggttaattggtaggaagtttagtgaccccgttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgaca 8667915  T
Q  344 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 404  Q
    |||| |  |||  ||| || ||||||||| | || |||||||||  |||||| ||||||||    
T  8667914 aacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatc 8667854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 8538631 - 8538552
Alignment:
Q  244 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggt 323  Q
    |||||||| |||| |||  ||||||| ||||||||||||||  || ||||||||||| |||||||||||||||| |||||    
T  8538631 gcagatgctaagaggttggttggaagaaaatatagtgattctgttattcagaatgatttactgttgtggcccttcaaggt 8538552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 347
Target Start/End: Complemental strand, 3147865 - 3147764
Alignment:
Q  246 agatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaa 345  Q
    ||||||||||| ||||||||| ||||| | | |||||||  ||||||| |||||| |  |||||||||| || |||||||||| ||| || |||||||||    
T  3147865 agatgcaaagaggttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtcatttgcggagtgaatgacaaa 3147766  T
Q  346 cc 347  Q
    ||    
T  3147765 cc 3147764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 404
Target Start/End: Original strand, 8635916 - 8636076
Alignment:
Q  244 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 343  Q
    ||||||| ||| | ||| ||||||||||| ||||||||| | ||  ||||||||||||||    |||||||||||||||| ||| | |||  | ||||||    
T  8635916 gcagatgtaaaaaggttgattggaaggaattatagtgatccaataattcagaatgatctaaatatgtggccctttaaggtaattgctggtcgtgatgaca 8636015  T
Q  344 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 404  Q
    |||| |  ||| ||||||| |||||||||||  |||||||  || || |||| ||||||||    
T  8636016 aacccatgattgttgtgaaatacaagggtgaacaaaagcaactttttcctgaggaaatatc 8636076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 409
Target Start/End: Complemental strand, 8655043 - 8654880
Alignment:
Q  246 agatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaa 345  Q
    |||||| |||| ||||||||| ||||| ||||||||| | |||||||| || ||| |  |||||||||| || | ||| | ||| |||||||||||||||    
T  8655043 agatgctaagaggttaattggtaggaagtatagtgatcctattgttcaaaaggatatcatgttgtggccattcatggttacttctggtgttaatgacaaa 8654944  T
Q  346 ccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctg 409  Q
    || |  |||  ||| || ||||| ||| | || ||||| |||  |||||| |||||||||||||    
T  8654943 cccatgattactgttaagtacaaaggtcaagagaagcaattttgtgctgaggaaatatcatctg 8654880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 8382450 - 8382504
Alignment:
Q  245 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatga 299  Q
    ||||||||||||  || ||||||||||||||||||||||| ||| ||||||||||    
T  8382450 cagatgcaaagagattgattggaaggaaatatagtgattctattattcagaatga 8382504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 1302058 - 1301916
Alignment:
Q  245 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 344  Q
    ||||||| ||||  |||||||| ||||| | |||||||||  ||||||| || ||  |  |||||||||| || ||||||||  ||||||| ||||||||    
T  1302058 cagatgctaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggtcatcgccggtgtgaatgacaa 1301959  T
Q  345 accgacaattcttgtgaactacaagggtgaggaaaagcacttt 387  Q
    |||    ||| |||| || ||||||||| |||| |||||||||    
T  1301958 acccgtgattgttgttaagtacaagggtcaggagaagcacttt 1301916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 8610511 - 8610433
Alignment:
Q  245 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggt 323  Q
    |||||||||||| ||| ||||||||||||||||| |||||  || |  | || ||||| | ||||||||||||||||||    
T  8610511 cagatgcaaagaggttgattggaaggaaatatagcgattctgttataaaaaacgatcttcagttgtggccctttaaggt 8610433  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 347
Target Start/End: Original strand, 8671217 - 8671306
Alignment:
Q  258 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaacc 347  Q
    ||||||||| ||||| | ||||||| |  ||||||| |  ||| || |||||||||| || ||||| ||||| |||||||||||||||||    
T  8671217 gttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacc 8671306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 347
Target Start/End: Original strand, 10493949 - 10494050
Alignment:
Q  246 agatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaa 345  Q
    |||||| |||| ||||||||| ||||| | ||||||| |  ||||||| || ||| || |||||||||| || ||||| | ||| ||||| |||||||||    
T  10493949 agatgctaagaggttaattggcaggaagtttagtgatccggttgttcaaaacgatataatgttgtggccattcaaggttacttcaggtgtcaatgacaaa 10494048  T
Q  346 cc 347  Q
    ||    
T  10494049 cc 10494050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 244 - 413
Target Start/End: Complemental strand, 12529099 - 12528930
Alignment:
Q  244 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 343  Q
    ||||||||||||| |||||||||||| || |||||||| ||||| |||||||| |||| |||||||||||| |||||||||| | | |||| ||||||||    
T  12529099 gcagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaaggatcaactgttgtggccatttaaggtcactgctggtgctaatgaca 12529000  T
Q  344 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgat 413  Q
    ||||||  || |||||||||||||| ||  ||||| | ||||||||||||||||||||||| ||| ||||    
T  12528999 aaccgaagatccttgtgaactacaatgggaaggaacatcactttgttgctgaagaaatatcctctatgat 12528930  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 382
Target Start/End: Original strand, 16661566 - 16661703
Alignment:
Q  245 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 344  Q
    ||||||| |||| ||||||||| ||||||| ||||||  || ||||||| || ||| ||||||||||||| || ||||| ||| | ||||||||||||||    
T  16661566 cagatgctaagaggttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaa 16661665  T
Q  345 accgacaattcttgtgaactacaagggtgaggaaaagc 382  Q
    ||| || |||  ||| || ||||||||| |||| ||||    
T  16661666 acctacgattagtgttaagtacaagggtcaggagaagc 16661703  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 404
Target Start/End: Original strand, 9335525 - 9335624
Alignment:
Q  305 tgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 404  Q
    |||||||||| || ||||| ||||| ||||||||||||||||| |  |||  ||| |||||||||||| | || |||||||||  |||||| ||||||||    
T  9335525 tgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactgttaactacaagggtcaagagaagcacttttgtgctgaggaaatatc 9335624  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 347
Target Start/End: Complemental strand, 35133040 - 35132938
Alignment:
Q  245 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 344  Q
    ||||||| || | ||||||||| ||||| | ||||||| | ||||||||  ||||| ||||| | ||||| || ||||||| | ||||||| ||||||||    
T  35133040 cagatgctaaaaggttaattggtaggaagtttagtgatcctattgttcaagatgatatactgctatggccattcaaggtcactgccggtgtaaatgacaa 35132941  T
Q  345 acc 347  Q
    |||    
T  35132940 acc 35132938  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 9337586 - 9337646
Alignment:
Q  267 aaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatt 327  Q
    |||||| ||||| ||| | ||| |||||||||||||| |||| |||||||||||| |||||    
T  9337586 aaggaactatagcgatccaattattcagaatgatctaatgttatggccctttaagctcatt 9337646  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 43537620 - 43537560
Alignment:
Q  164 aaatattgaatctatgctctcatgtgtttattagttgatatgaaaatgaaaataggaagta 224  Q
    ||||||| |||||||  |||| | ||||||||||||||  |||||||||||| ||||||||    
T  43537620 aaatattaaatctatattctcctatgtttattagttgaagtgaaaatgaaaacaggaagta 43537560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 413
Target Start/End: Complemental strand, 15595588 - 15595465
Alignment:
Q  287 ttgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactt 386  Q
    ||||||| |||||| ||  ||||||||| || |||||||||   ||||| ||||||||||| |  ||| |||| || ||||||||| | ||||||| |||    
T  15595588 ttgttcaaaatgatataaagttgtggccattcaaggtcatt---ggtgtgaatgacaaacccatgattattgttaaatacaagggtcaagaaaagcgctt 15595492  T
Q  387 tgttgctgaagaaatatcatctgtgat 413  Q
    |  |||||| |||||||| ||| ||||    
T  15595491 ttgtgctgaggaaatatcgtctatgat 15595465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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