View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20104_low_3 (Length: 425)

Name: NF20104_low_3
Description: NF20104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20104_low_3
NF20104_low_3
[»] chr7 (11 HSPs)
chr7 (14-412)||(31202692-31203089)
chr7 (177-408)||(31061979-31062210)
chr7 (177-412)||(31049652-31049887)
chr7 (177-408)||(31162552-31162783)
chr7 (177-408)||(31144728-31144959)
chr7 (181-408)||(31107150-31107377)
chr7 (16-101)||(31145031-31145116)
chr7 (16-101)||(31162855-31162940)
chr7 (19-101)||(31049959-31050041)
chr7 (19-96)||(31107456-31107533)
chr7 (17-96)||(31062450-31062529)
[»] chr5 (2 HSPs)
chr5 (305-408)||(42315247-42315350)
chr5 (301-405)||(37016363-37016467)
[»] chr3 (1 HSPs)
chr3 (304-405)||(24268665-24268766)
[»] chr4 (2 HSPs)
chr4 (362-412)||(42736248-42736298)
chr4 (362-412)||(42768149-42768199)
[»] chr8 (1 HSPs)
chr8 (369-397)||(8132910-8132938)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 31202692 - 31203089
Alignment:
Q  14 ctatggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatatatacatggactag 113  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31202692 ctatggaagaaagccagctccagtaatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatatatacatggactag 31202791  T
Q  114 taatcaactatctatagtaatggtcctccttagttgtcnnnnnnnnnncaatggggtatttaatttgttttttgtttcagcctgatgtaactgcaccagg 213  Q
    ||||||||||||||||||||||||| ||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31202792 taatcaactatctatagtaatggtcttccttagttgtcttttttttt-caatggggtatttaatttgttttttgtttcagcctgatgtaactgcaccagg 31202890  T
Q  214 tgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcgcaacaattttccattcaatgtactacaaggaacttct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31202891 tgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaaaaacagacaatcgcaacaattttccattcaatgtactacaaggaacttct 31202990  T
Q  314 atgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccagcagctattaaatcagctatcatgaccacaggt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31202991 atgtcttgccctcatgttgccggcattgcgggacttatcaaaacattgcatcctaattggagtccagcagctattaaatcagctatcatgaccacaggt 31203089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 177 - 408
Target Start/End: Complemental strand, 31062210 - 31061979
Alignment:
Q  177 tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg 276  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  || ||||||||||||||| |||||||||||||    
T  31062210 tttgttttttgtttcagcctgatgtaactgcacctggtgtgaacatacttgctgcctattcattgtttgctagtgcatctaatttactaacagacaatcg 31062111  T
Q  277 caacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagt 376  Q
    |     |||||| ||||||||| | |||||||||||||||||||||||||||||||| || | ||| |||||||||||||||   |||||||||||||||    
T  31062110 ccgaggttttcccttcaatgtaatgcaaggaacttctatgtcttgccctcatgttgctgggactgctggacttatcaaaacacttcatcctaattggagt 31062011  T
Q  377 ccagcagctattaaatcagctatcatgaccac 408  Q
    ||||||||||||||||||||||| ||||||||    
T  31062010 ccagcagctattaaatcagctattatgaccac 31061979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 177 - 412
Target Start/End: Complemental strand, 31049887 - 31049652
Alignment:
Q  177 tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg 276  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||  |||||||  ||||||||| |||||||||||||    
T  31049887 tttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcg 31049788  T
Q  277 caacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagt 376  Q
          ||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||   |||||||||||||||    
T  31049787 tcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagt 31049688  T
Q  377 ccagcagctattaaatcagctatcatgaccacaggt 412  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31049687 ccagcagctattaaatcagctattatgaccacaggt 31049652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 177 - 408
Target Start/End: Complemental strand, 31162783 - 31162552
Alignment:
Q  177 tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg 276  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||   |||||||  ||||||||| |||||||||||||    
T  31162783 tttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgtgtctaatttagtaacagacaatcg 31162684  T
Q  277 caacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagt 376  Q
          ||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||   |||||||||||||||    
T  31162683 tcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagt 31162584  T
Q  377 ccagcagctattaaatcagctatcatgaccac 408  Q
    ||||||||||||||||||||||||||||||||    
T  31162583 ccagcagctattaaatcagctatcatgaccac 31162552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 177 - 408
Target Start/End: Complemental strand, 31144959 - 31144728
Alignment:
Q  177 tttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcg 276  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||   |||||||  ||||||||| |||||||||||||    
T  31144959 tttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgtgtctaatttagtaacagacaatcg 31144860  T
Q  277 caacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagt 376  Q
          ||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||| ||| |||||||||||||||   |||||||||||||||    
T  31144859 tcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgttggcactgctggacttatcaaaacacttcatcctaattggagt 31144760  T
Q  377 ccagcagctattaaatcagctatcatgaccac 408  Q
    || |||||||||||||||||||||||||||||    
T  31144759 cctgcagctattaaatcagctatcatgaccac 31144728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 181 - 408
Target Start/End: Complemental strand, 31107377 - 31107150
Alignment:
Q  181 ttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaataacagacaatcgcaac 280  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||| |||        
T  31107377 tttttcgtttcagcctgatgtaactgcgccaggtgtgaacatactcgctgcctattcattgtttgcaagtgcatctaatttaataacagacactcgtcga 31107278  T
Q  281 aattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccag 380  Q
      |||||||||||||||| | |||||||||||||||||||| || ||||||||||||| ||| ||| | |||||||||   |||||||||||||||||||    
T  31107277 ggttttccattcaatgtaatgcaaggaacttctatgtcttgtccacatgttgccggcactgctggattaatcaaaacacttcatcctaattggagtccag 31107178  T
Q  381 cagctattaaatcagctatcatgaccac 408  Q
    ||||||||||||| ||||| ||||||||    
T  31107177 cagctattaaatcggctataatgaccac 31107150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 31145116 - 31145031
Alignment:
Q  16 atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatata 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||||||| ||||    
T  31145116 atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaagttcaaccatatatactcaaggtgtttata 31145031  T

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Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 31162940 - 31162855
Alignment:
Q  16 atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatata 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||  ||||||||||||| ||||    
T  31162940 atggaagaaagccagctccagttatggcttcattctcatctagaggaccaaatcaagttcaaccatatatactcaaggtgtttata 31162855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 31050041 - 31049959
Alignment:
Q  19 gaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgtatata 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||||||||||| ||||    
T  31050041 gaagaaaaccagctccagttatggcttcattctcatctagaggaccaaatcaagttcagccatatatactcaaggtgtttata 31049959  T

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Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 31107533 - 31107456
Alignment:
Q  19 gaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgt 96  Q
    |||||||||||||||||||||||||||| | ||| |||||||||||||||||| |||| |||||||||||||||||||    
T  31107533 gaagaaagccagctccagttatggcttcctactcttctagaggaccaaataaagttcaaccatcaatactcaaggtgt 31107456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 31062529 - 31062450
Alignment:
Q  17 tggaagaaagccagctccagttatggcttcattctcatctagaggaccaaataaaattcagccatcaatactcaaggtgt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||  |||||||||||||    
T  31062529 tggaagaaagccagctccagttatggcttcattctcatctagaggtccaaatcaagttcaaccatatatactcaaggtgt 31062450  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 408
Target Start/End: Original strand, 42315247 - 42315350
Alignment:
Q  305 ggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccagcagctattaaatcagctatcatga 404  Q
    |||||||||||| | |||||||||||  | ||||| || || ||| ||||||||   |||||||| ||||||||||||||||| ||||||||||| ||||    
T  42315247 ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga 42315346  T
Q  405 ccac 408  Q
    ||||    
T  42315347 ccac 42315350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 405
Target Start/End: Complemental strand, 37016467 - 37016363
Alignment:
Q  301 acaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccagcagctattaaatcagctatc 400  Q
    |||||||||||| |||||||| ||||||||||| |||||||  || ||| |||| |||   ||||||| |||||||||||| || || ||||| || |||    
T  37016467 acaaggaacttcaatgtcttgtcctcatgttgctggcattgtcggtcttctcaagacacttcatcctagttggagtccagctgccatcaaatctgccatc 37016368  T
Q  401 atgac 405  Q
    |||||    
T  37016367 atgac 37016363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 24268665 - 24268766
Alignment:
Q  304 aggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacaaagcatcctaattggagtccagcagctattaaatcagctatcatg 403  Q
    |||||||||||| || |||||||||||| | | |||||  |  ||| |||||||||   |||||||||||||||| |||||| ||||||| |||||||||    
T  24268665 aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaattggagtcctgcagcttttaaatctgctatcatg 24268764  T
Q  404 ac 405  Q
    ||    
T  24268765 ac 24268766  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 42736248 - 42736298
Alignment:
Q  362 catcctaattggagtccagcagctattaaatcagctatcatgaccacaggt 412  Q
    |||||| ||||||||||||||||||| || ||||| |||||||||||||||    
T  42736248 catcctgattggagtccagcagctatcaagtcagcaatcatgaccacaggt 42736298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 42768199 - 42768149
Alignment:
Q  362 catcctaattggagtccagcagctattaaatcagctatcatgaccacaggt 412  Q
    |||||| ||||||||||||| |||||||| || || |||||||||||||||    
T  42768199 catcctgattggagtccagctgctattaagtccgcgatcatgaccacaggt 42768149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 397
Target Start/End: Complemental strand, 8132938 - 8132910
Alignment:
Q  369 attggagtccagcagctattaaatcagct 397  Q
    |||||||||||||||||||||||||||||    
T  8132938 attggagtccagcagctattaaatcagct 8132910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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