View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20104_low_4 (Length: 270)

Name: NF20104_low_4
Description: NF20104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20104_low_4
NF20104_low_4
[»] chr1 (10 HSPs)
chr1 (7-246)||(2569000-2569234)
chr1 (47-219)||(29119324-29119495)
chr1 (47-217)||(32676136-32676305)
chr1 (47-196)||(8462129-8462276)
chr1 (47-144)||(8809715-8809811)
chr1 (47-141)||(25161309-25161402)
chr1 (128-219)||(46435465-46435556)
chr1 (47-108)||(46435563-46435624)
chr1 (48-81)||(16679835-16679868)
chr1 (57-140)||(3688917-3689000)
[»] chr7 (7 HSPs)
chr7 (47-204)||(35341536-35341692)
chr7 (47-219)||(48250154-48250327)
chr7 (71-219)||(32694570-32694717)
chr7 (46-219)||(31306868-31307046)
chr7 (152-219)||(48072491-48072558)
chr7 (152-203)||(40856949-40857000)
chr7 (47-111)||(40856392-40856456)
[»] chr5 (14 HSPs)
chr5 (52-219)||(33858538-33858704)
chr5 (47-219)||(11607534-11607705)
chr5 (47-219)||(19357262-19357432)
chr5 (63-219)||(33271630-33271785)
chr5 (47-215)||(1826259-1826426)
chr5 (47-144)||(38010689-38010785)
chr5 (47-183)||(39570079-39570214)
chr5 (47-144)||(13015381-13015477)
chr5 (47-144)||(29989962-29990058)
chr5 (47-118)||(13086753-13086824)
chr5 (47-144)||(9827788-9827884)
chr5 (47-144)||(13478120-13478216)
chr5 (102-196)||(42148201-42148294)
chr5 (152-196)||(25482742-25482786)
[»] chr2 (10 HSPs)
chr2 (47-219)||(34392081-34392252)
chr2 (61-219)||(23863803-23863958)
chr2 (50-203)||(7381695-7381846)
chr2 (47-219)||(37357917-37358092)
chr2 (97-215)||(4779635-4779752)
chr2 (47-144)||(21603959-21604055)
chr2 (47-212)||(4775634-4775799)
chr2 (158-219)||(21606149-21606210)
chr2 (98-219)||(25275622-25275741)
chr2 (48-95)||(34904304-34904351)
[»] chr3 (17 HSPs)
chr3 (60-219)||(37742738-37742896)
chr3 (47-215)||(44380254-44380421)
chr3 (51-222)||(33509684-33509854)
chr3 (47-194)||(47426350-47426496)
chr3 (48-144)||(50934501-50934596)
chr3 (47-144)||(47186175-47186271)
chr3 (49-115)||(32319468-32319534)
chr3 (47-144)||(31187145-31187241)
chr3 (47-113)||(10179868-10179934)
chr3 (47-144)||(42664673-42664769)
chr3 (55-217)||(35094554-35094717)
chr3 (47-113)||(10018671-10018737)
chr3 (47-144)||(34029366-34029462)
chr3 (49-118)||(39498769-39498838)
chr3 (47-113)||(10123211-10123277)
chr3 (167-219)||(19619217-19619269)
chr3 (70-212)||(17466296-17466437)
[»] chr4 (16 HSPs)
chr4 (47-219)||(12473704-12473875)
chr4 (47-219)||(12528113-12528284)
chr4 (47-215)||(35869575-35869742)
chr4 (47-215)||(51811914-51812081)
chr4 (47-204)||(21260794-21260950)
chr4 (47-211)||(22343337-22343500)
chr4 (48-199)||(33249394-33249544)
chr4 (47-219)||(55590482-55590642)
chr4 (48-142)||(52910126-52910219)
chr4 (47-144)||(52012778-52012874)
chr4 (48-119)||(34829182-34829253)
chr4 (51-106)||(49998486-49998541)
chr4 (47-144)||(9799438-9799534)
chr4 (48-144)||(49999663-49999758)
chr4 (152-215)||(1796654-1796717)
chr4 (160-215)||(35781021-35781076)
[»] chr8 (7 HSPs)
chr8 (47-215)||(41179567-41179734)
chr8 (47-219)||(24337830-24338001)
chr8 (47-219)||(11254028-11254198)
chr8 (55-193)||(4708333-4708470)
chr8 (54-144)||(18168392-18168481)
chr8 (54-144)||(18631949-18632038)
chr8 (47-144)||(1514803-1514899)
[»] chr6 (7 HSPs)
chr6 (48-215)||(1211848-1212014)
chr6 (47-219)||(5403876-5404047)
chr6 (47-219)||(32644838-32645007)
chr6 (47-112)||(11753167-11753232)
chr6 (47-144)||(34245567-34245663)
chr6 (175-219)||(10503259-10503303)
chr6 (48-119)||(11113557-11113628)
[»] scaffold0519 (1 HSPs)
scaffold0519 (47-219)||(11195-11365)
[»] scaffold0229 (1 HSPs)
scaffold0229 (48-219)||(13005-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (47-219)||(34194-34363)
[»] scaffold0263 (1 HSPs)
scaffold0263 (48-144)||(23174-23263)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 2569000 - 2569234
Alignment:
Q  7 ttaataacatttttgagcatgttgtagatgattattaagcccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccac 106  Q
    |||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  2569000 ttaataacatttttgagcatgttgtagat---tattgagcccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccac 2569096  T
Q  107 ctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgtt 206  Q
    ||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||| |||||||||||| | |||| |||||||||||||||||    
T  2569097 ctaccaatgttacattacc-aatgctttatttgatata-ttttttaaagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgtt 2569194  T
Q  207 acacaagtgctatttgtcagcgtactttggatgttggaac 246  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  2569195 acacaagtgctatccgtcagcgtactttggatgttggaac 2569234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 29119495 - 29119324
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||| || |||||| |||  | |||||||||||||||||      
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttacttta-tagatgctttatttgatatatt 29119397  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         |||||||||||||  || |||||||||||||| |||| ||||||| | ||||| ||||||| ||||||    
T  29119396 tttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 32676136 - 32676305
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| | ||  ||||||||||||||||| |||  |||||||||||||||||||      
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttacttta-taaatgctttatttgatatatt 32676234  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 217  Q
         ||||  |||||||  || |||| |||||||||||||||||||||| ||||||  ||||||| ||||    
T  32676235 tttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 8462129 - 8462276
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||  ||||| ||||||||| |||||||||||   |||||| ||||||||||||||||||||||  |||  ||||| ||||||| |||||      
T  8462129 ccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttatttta-taaatgttttatttaatatact 8462226  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 196  Q
         |||||| |||||| |||||||||| ||||||||||||||||||||    
T  8462227 tttttaaagggcgtgccacgtgacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 8809811 - 8809715
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttacttta-taaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 25161309 - 25161402
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgat 141  Q
    |||||||||||||||||| ||  ||||| |||||| ||||  ||||||||||||||||||||| ||||||||| |||  ||||| ||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttacttta-taaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 46435556 - 46435465
Alignment:
Q  128 atgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    |||||||||||||||||       |||||||||| ||  ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  46435556 atgctttatttgatatatatttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctat 46435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 46435624 - 46435563
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacct 108  Q
    |||||||||||||||||||||||||||| ||||||  ||| |||||||| |||| | |||||    
T  46435624 ccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct 46435563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 16679868 - 16679835
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatata 81  Q
    ||||||||||||||||||||||||||| ||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatata 16679835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 3689000 - 3688917
Alignment:
Q  57 accattaaggtacc-aatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttga 140  Q
    ||||||||| |||| ||| ||||||||||||  ||||||| ||||| | ||||||||||||||| |||  ||||| |||||||||    
T  3689000 accattaagatacccaataatatatatcattgaccaattagagtgtacaacctaccaatgttacttta-taaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 35341536 - 35341692
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||      
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttacttta-taaatgttttatttgatatact 35341634  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatg 204  Q
         ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  35341635 tttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatg 35341692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 48250154 - 48250327
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||  | ||||||||||||||||       
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatttt 48250252  T
Q  147 nnnnnaaagggtgtgc--catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         ||||||| |||  |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  48250253 tttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctat 48250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 32694717 - 32694570
Alignment:
Q  71 aatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgac 170  Q
    ||||||||||| |||| |  ||||| ||||| ||| ||| ||||||||| |||  |||| ||||||||||||||       ||||||||||||| |||||    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttat-aaattctttatttgatatatttttttaaagggtgtgccacgtgac 32694619  T
Q  171 acattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    ||||||||||| | |||||||||||| ||||||  ||||||||||||||    
T  32694618 acattctaattaggcaatggtatataccattatagtacacaagtgctat 32694570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 31307046 - 31306868
Alignment:
Q  46 cccacttgtgtaccattaaggtaccaatgatatatatcatttgccaa-ttacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||| |||||||||||||| ||| |||||||||||||||||  |||| ||| ||||||| ||||||||||||||| |||  ||||||||||||||||  |    
T  31307046 cccatttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttacttta-taaatgctttatttgatgaa 31306948  T
Q  145 nnnnnnnaa-----agggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
           ||     ||| |||| ||||||  ||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  31306947 aataaataaattataggatgtgtcatgtggtacattctaattggacaatgatatatatcattatggtacacaaatgctat 31306868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 48072491 - 48072558
Alignment:
Q  152 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  48072491 aaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctat 48072558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 40856949 - 40857000
Alignment:
Q  152 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattat 203  Q
    |||||||||||||  ||||||||||||||||||||||| |||||| ||||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 40856392 - 40856456
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacc 111  Q
    |||||| |||| ||||||||||| |||||||||||| |||   |||||| |||||| ||||||||    
T  40856392 ccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 33858704 - 33858538
Alignment:
Q  52 tgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnn 151  Q
    ||||||||||||||||||||||  |||||||||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||           
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttat-aaatgttttatttgatatactttttt 33858606  T
Q  152 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  33858605 aaagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctat 33858538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 11607705 - 11607534
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||| ||||||||||||||||||| |||||| ||||  ||||||| |||||||||||||||||| |||| |||  ||||| |||||||||||||      
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttat-aaatgttttatttgatatact 11607607  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         ||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11607606 tttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctat 11607534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 19357432 - 19357262
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    ||||||||||||||||| |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacttta-taaatgctttatttgatata-t 19357335  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         ||||| ||| ||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  19357334 tttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctat 19357262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 219
Target Start/End: Original strand, 33271630 - 33271785
Alignment:
Q  63 aaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgc 162  Q
    |||||||||||||||||||||||| |||||||| |||||| || ||| ||||||||| ||   |||||||||||||||||||       ||||| || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttac-ttgataaatgctttatttgatatatttttttaaaggatgcgc 33271728  T
Q  163 catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    || ||| |||||||||||||| |||| ||||||| ||||||| |||| |||||||||    
T  33271729 cacgtggcacattctaattgggcaatagtatataccattatggtacataagtgctat 33271785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 1826259 - 1826426
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||| ||||||||||| |||| ||   | |||||||||||||||||      
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattac-tttgtagatgctttatttgatatatt 1826357  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 215  Q
         ||||  |||||||  || |||||| |||||| |||||| |||||||||||||| ||||||||||    
T  1826358 tttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtg 1826426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 38010785 - 38010689
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 183
Target Start/End: Complemental strand, 39570214 - 39570079
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    ||||||||||| |||||| ||| ||||| |||||| |||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||      
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatact 39570116  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattgg 183  Q
         |||||||||||||  ||||| |||||||||||    
T  39570115 tttttaaagggtgtgccacctgacatattctaattgg 39570079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 13015381 - 13015477
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||  |||||||||||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 29989962 - 29990058
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||| ||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 13086753 - 13086824
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 118  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgtta 13086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 9827788 - 9827884
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||||||||| |||||| | || | |||||| ||||| |||||||||||| |||| |||  ||||  |||||||||||||    
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattacttta-taaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 13478216 - 13478120
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||| ||||||| |||||| ||||  ||||| | |||||||||| ||||| |||||| |||  ||||  |||||||||||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttacttta-taaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 42148201 - 42148294
Alignment:
Q  102 gccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 196  Q
    |||||||||||||||||| |||  ||||| |||||||||||||       ||||||||| ||| ||  ||||||||||||| |||||||||||||    
T  42148201 gccacctaccaatgttactttat-aaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatata 42148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 25482786 - 25482742
Alignment:
Q  152 aaagggtgtgccatgtgacacattctaattggacaatggtatata 196  Q
    ||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  25482786 aaagggtgtgccatgtggcacatcctaattgggcaatgttatata 25482742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 34392252 - 34392081
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttacttta-taaatgctttatttgatatatt 34392154  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         |||||||||||||  || |||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  34392153 tttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctat 34392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 61 - 219
Target Start/End: Complemental strand, 23863958 - 23863803
Alignment:
Q  61 ttaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgt 160  Q
    |||||||||||||| |||||   ||| | |||||| ||||||||||||||||||||||| |||  |||||||||||||||||||       |||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttat-aaatgctttatttgatatatatttttaaagggtgt 23863862  T
Q  161 gccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    ||||  || |||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  23863861 gccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctat 23863803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 7381695 - 7381846
Alignment:
Q  50 cttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnn 149  Q
    ||||||||||||||||||||||||| ||||||  ||| |||||||| ||||||||| ||||||||||||| |||  |||| ||||||||||||||         
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttacttta-taaattctttatttgatata-tttt 7381792  T
Q  150 nnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattat 203  Q
      ||||| |||| ||||||||||||| ||||||| |||| ||||||| ||||||    
T  7381793 ttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattat 7381846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 37358092 - 37357917
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    ||||||||||| ||||||||||||||||||||||| ||||  | ||||| |||||| |||||| ||||||||| |||  ||||||||||||| ||||       
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttat-aaatgctttatttaatatttt 37357994  T
Q  147 nnnnn----aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
             |||   ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  37357993 tttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctat 37357917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 4779635 - 4779752
Alignment:
Q  97 agtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 196  Q
    |||||||| |||| ||||||||| |||  |||| ||||||||||||||       ||||| |||| || |||||||||||||||||||||||||||||||    
T  4779635 agtgtgccgcctaacaatgttactttat-aaatactttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatata 4779733  T
Q  197 tcattatgttacacaagtg 215  Q
     ||||||| ||||||||||    
T  4779734 ccattatgatacacaagtg 4779752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 21603959 - 21604055
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| |||||  |||||||||||||||| |||  ||||| |||||||||||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttacttta-taaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 4775634 - 4775799
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||| |||||||||||| |||||||||||||||| ||| |||||||| | |||  || |||||||| |||| |||  || || ||||||| |||||      
T  4775634 ccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatatt 4775733  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaa 212  Q
         ||||| |||||||  || |||| | |||||||||||||||||||| ||||||| |||||||    
T  4775734 tttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaa 4775799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 21606149 - 21606210
Alignment:
Q  158 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctat 21606210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 25275741 - 25275622
Alignment:
Q  98 gtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatat 197  Q
    |||||||||||| ||||||||| ||   |||| ||||||||||||||       ||||| ||||||| |||| ||||||||||||||||||| ||||||     
T  25275741 gtgtgccacctatcaatgttactttt--aaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatgatatatac 25275644  T
Q  198 cattatgttacacaagtgctat 219  Q
    ||||||| |||| |||||||||    
T  25275643 cattatgatacagaagtgctat 25275622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 34904351 - 34904304
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaatta 95  Q
    ||||| |||| |||||||||||||||| |||||||||||||| |||||    
T  34904351 cacttttgtatcattaaggtaccaatgttatatatcatttgctaatta 34904304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 37742738 - 37742896
Alignment:
Q  60 attaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtg 159  Q
    ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||       |||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattacc-aatgctttatttgatatatttttttaaagagtg 37742836  T
Q  160 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    ||||| ||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  37742837 tgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctat 37742896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 44380254 - 44380421
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| |||||| |||| |||| |||  |||||||||||||||||||      
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttat-aaatgctttatttgatatact 44380352  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 215  Q
         ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44380353 tttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtg 44380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 33509684 - 33509854
Alignment:
Q  51 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnn 150  Q
    ||||||||||||||||||| |||  |||||||||||  ||||||| |||||||||||||||||| |||| |||  | |||||||||||||| ||          
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattacttta-tagatgctttatttgatgtatttttt 33509782  T
Q  151 naaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctatttg 222  Q
     ||||| |||||||  || |||||||||||| ||||||| |||||| ||||||  |||||||||||||||||    
T  33509783 taaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctatttg 33509854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 47426350 - 47426496
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||||||||  |||||| |||| |||||||| |||||| |||||| ||||||||| |||  | |||||||||||||||||      
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttacttta-tagatgctttatttgatatatt 47426448  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtata 194  Q
         |||||||||||||  ||  ||||||||||||| ||||||||||    
T  47426449 tttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 50934501 - 50934596
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||| |||||||||||| |||  |||||| ||||||||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttacttta-taaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 47186175 - 47186271
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 47186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  49 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatg 115  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 31187241 - 31187145
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||| ||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 10179934 - 10179868
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 113  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||||||||||||||    
T  10179934 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 42664673 - 42664769
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||||||| | |||||| ||||  ||||| | |||||||||| |||||||||||  |||  ||||| |||||||||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttatttta-taaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 35094554 - 35094717
Alignment:
Q  55 gtaccattaaggtaccaatgatatatatcatttgccaattacagtgt--gccacctaccaatgttacattaccaaatgctttatttgatatannnnnnna 152  Q
    |||||||||| |||||| || |||||| ||||  | ||||| || ||  |||||||||||||||||| |||  ||||  |||||||||||||       |    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttat-aaatattttatttgatatattttttta 35094652  T
Q  153 aagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 217  Q
    |||| |||| || |||||||||||||||||||||||| || ||| ||||||| ||||||| ||||    
T  35094653 aaggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 10018737 - 10018671
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 113  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||| | |||||||||||||||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 34029462 - 34029366
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||| ||||||||||||||||||| |||||| ||||   |||| | |||||||||| ||| |||||||| |||  ||||| |||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttacttta-taaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 39498838 - 39498769
Alignment:
Q  49 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 118  Q
    |||||||||||||||| ||||||||||||||||| ||| | |||||| |||||| |||||| | ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgtta 39498769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 10123277 - 10123211
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 113  Q
    |||||||||||||||||| ||| ||||| ||||||||| | | |||| | |||||||||||||||||    
T  10123277 ccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 19619217 - 19619269
Alignment:
Q  167 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||||| |||||||    
T  19619217 tgacacattttaattgggcaatggtatataccattatggtacacatgtgctat 19619269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 17466296 - 17466437
Alignment:
Q  70 caatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtga 169  Q
    ||||| ||||||||||| | |||||| |||||| |||||| ||||||||| |||  ||||| |||| ||||||||       ||||||| ||||| ||      
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttacttta-taaatgatttagttgatatatttttttaaagggtatgccacgtac 17466394  T
Q  170 cacattctaattggacaatggtatatatcattatgttacacaa 212  Q
    |||| ||||| ||  |||||||||||| ||||| | |||||||    
T  17466395 cacaatctaactgagcaatggtatataccattacggtacacaa 17466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 12473704 - 12473875
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||      
T  12473704 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatt 12473802  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         |||||||||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12473803 tttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12473875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 12528113 - 12528284
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||      
T  12528113 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatt 12528211  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         |||||||||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12528212 tttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12528284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 35869742 - 35869575
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| | |||||||||||||||||||||  ||  ||||| |||||||||||||      
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactata-taaatgttttatttgatatact 35869644  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 215  Q
         ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| || |||||||    
T  35869643 tttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 51811914 - 51812081
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    ||||| |||||||||||||||| ||| ||||||||| ||| |||||||| ||| ||||||||||||||||||| |||  ||||  ||| |||||||||      
T  51811914 ccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttat-aaattttttttttgatatatt 51812012  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 215  Q
         ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||    
T  51812013 tttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtg 51812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 21260794 - 21260950
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||      
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatt 21260892  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatg 204  Q
         |||||||||||||  || ||||||||||||||  |||| |||||| |||||||    
T  21260893 tttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 22343337 - 22343500
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||| |||||| || ||| ||||||||| |||  |||||||||||||||||||      
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttacttta-taaatgctttatttgatatatt 22343435  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacaca 211  Q
         ||||| |||||||  |||||||||||||||| |||||| |||||| ||||||| ||||||    
T  22343436 attttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacaca 22343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 33249544 - 33249394
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 147  Q
    |||||||||||||||||||||| |||| ||||||  ||| |||||||| |||||| |||||||||||||||| |||  |||||||||||||||||||       
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttacttta-taaatgctttatttgatatatat 33249446  T
Q  148 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatca 199  Q
        |||||||||||||  || |||| ||||||||  ||||| |||||||||    
T  33249445 ttttaaagggtgtgccacatggcacaatctaattgagcaatgatatatatca 33249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 55590482 - 55590642
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||| |||||| |||||||||||||||            ||||||||||||||      
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta------------ctttatttgatatact 55590569  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         ||||| ||||||| |||||||||||||||||| |||||| ||||| ||||||| ||| ||||||||||    
T  55590570 tttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctat 55590642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 52910219 - 52910126
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgata 142  Q
    |||||||||||||| | |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattacttta-taaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 52012778 - 52012874
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttacttta-taaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 34829253 - 34829182
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttac 119  Q
    ||||| ||||| ||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||    
T  34829253 cacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttac 34829182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  51 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccac 106  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||  |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 9799534 - 9799438
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||| ||||||||||||||||||| |||||| ||||  ||||  | | |||||||| |||||||||||| |||  ||||| ||||||| |||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttacttta-taaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 49999758 - 49999663
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||| ||| ||| |||| ||| | ||||| | |||||| |||||| ||| |||||||||||  |||  |||||||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttatttta-taaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 1796654 - 1796717
Alignment:
Q  152 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 215  Q
    ||||| |||| || ||| |||| | |||||||||||||||||||| ||||||| ||||||||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtg 1796717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 35781021 - 35781076
Alignment:
Q  160 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 215  Q
    ||||| ||| |||||||||||||| |||||||||||| ||||||| ||| ||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtg 35781076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 41179734 - 41179567
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||| |||  ||||| ||||||| |||||      
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttacttta-taaatgttttatttaatatatt 41179636  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 215  Q
         || || |||||||  || |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  41179635 tttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 24338001 - 24337830
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||| ||||||||| ||||| |||||| |||  | |||||| ||||||||| ||||||||||||| |||  | |||||||||||||||||      
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttat-agatgctttatttgatatata 24337903  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         |||||||||||||  |  ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  24337902 tttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctat 24337830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 11254198 - 11254028
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11254101  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11254100 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11254028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 4708470 - 4708333
Alignment:
Q  55 gtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaa 154  Q
    |||||| |||||||||||||  |||||||||  |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||       |||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatatttttaaa 4708372  T
Q  155 gggtgtgccatgtgacacattctaattggacaatggtat 193  Q
    |||||||||| ||| |||||||||||| | |||||||||    
T  4708371 gggtgtgccacgtggcacattctaattaggcaatggtat 4708333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 18168392 - 18168481
Alignment:
Q  54 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 18631949 - 18632038
Alignment:
Q  54 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 1514803 - 1514899
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    |||||||||||||||||||||||||||| |||||| ||||   |||| | ||||| |||| |||||||||||| |||  ||||| |||||||||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttacttta-taaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 1212014 - 1211848
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 147  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| | | ||||||||||||||||       
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcga-tgctttatttgatatattt 1211916  T
Q  148 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 215  Q
        ||||||||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||    
T  1211915 ttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtg 1211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 5404047 - 5403876
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    ||||||||||||||||||||||| |||| ||||||| ||| | || ||| ||| ||||||||||||||||||| |||  | ||| |||||||||||||      
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttat-agatgttttatttgatatatt 5403949  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         |||||| ||  ||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5403948 tttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctat 5403876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 32645007 - 32644838
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||| |||||||||||||| || | ||  ||||||||||| ||||||||  ||||| ||||||| |||||||| |||  |||| ||||||||| ||||      
T  32645007 ccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta--aaatactttatttgttatatt 32644910  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         |||||||||||||  ||| ||| |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  32644909 tttttaaagggtgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctat 32644838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacca 112  Q
    |||||||||||||||||||||||||||| |||||| |||  |||||||| ||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 34245567 - 34245663
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    ||||||||||||||||||||||  |||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttacttta-taaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 10503303 - 10503259
Alignment:
Q  175 tctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  10503303 tctaattggacaatggtatataccattatggtacacaagtgctat 10503259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 11113557 - 11113628
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttac 119  Q
    ||||||||||||||||||||||||||| |||||| ||||  | ||| | |||||| ||| ||| ||||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttac 11113628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 11195 - 11365
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11292  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11293 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 219
Target Start/End: Complemental strand, 13176 - 13005
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 147  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| |  |||||||||||||||||       
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatc-gatgctttatttgatatattt 13078  T
Q  148 nnnnaaaggg-tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
        |||||| ||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||||||    
T  13077 ttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctat 13005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 34194 - 34363
Alignment:
Q  47 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 146  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||||||| |||| |||  ||||  |||||||||||||      
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattacttta-taaatattttatttgatata-t 34291  T
Q  147 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 219  Q
         |||||||||| || ||||||||||||||||||| |||| |||||| | ||||| ||||||| ||||||    
T  34292 tttttaaagggtgtgtcacgtgacacattctaattggataatgttatata-ccttatggtacacaaatgctat 34363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 23263 - 23174
Alignment:
Q  48 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 144  Q
    ||||||||||||||||||||||       |||||||||| |||||||| |||||||||||||||||| |||| |||  ||||  |||||||||||||    
T  23263 cacttgtgtaccattaaggtac------gatatatcattggccaattagagtgtgccacctaccaattttacttta-taaatattttatttgatata 23174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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