View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20104_low_6 (Length: 236)
Name: NF20104_low_6
Description: NF20104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20104_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2271377 - 2271157
Alignment:
| Q |
1 |
tgtaagtgtgttttattttgtatnnnnnnnncgacatagagaaactgatagcttacgttttttactatcctaagcagtgatttccagcaggattttgatt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2271377 |
tgtaagtgtgttttattttgtataaaaaaaacgacatagagaaactgatagcttacgttttttactatcctaagcagtgatttccagcaggattttgatt |
2271278 |
T |
|
| Q |
101 |
ctacgtctaccaccgtaaataatattcttcaagaaaatatctttgcggtggatattttttcttcatgtatcagaaggggaaaattaatcagagcatatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2271277 |
ctacgtctaccaccgtaaataatattcttcaagaaaatatctttgcggtggatattttttcttcatgtatcacaaggggaaaattaatcagagcatatat |
2271178 |
T |
|
| Q |
201 |
gaaatctagtttaacaaaaat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2271177 |
gaaatctagtttaacaaaaat |
2271157 |
T |
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