View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20105_high_12 (Length: 271)
Name: NF20105_high_12
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20105_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 28208832 - 28209069
Alignment:
| Q |
17 |
caactcctacttgcatccttaaatttatgagagcaattttcctcaccccatatttttaaaaattacatgtttttaaacatgtaattatacttttttcctt |
116 |
Q |
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| T |
28208832 |
caactcctacttgcatccttaaatttatgagagcaattttcctcaccccatatttttaaaaattacatgtttttaaacatgtaattatacttttttcctt |
28208931 |
T |
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| Q |
117 |
ttgaatgtgtacatttgaaagttatattcaagggtgtgaaaaatctatatatatttggcaacaaaccttgcattccctttgccaagatccagcatctcct |
216 |
Q |
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| T |
28208932 |
ttgaatgtgtacatttgaaagttatattcaagggtgtgaaaaa--tatatatatttggctacaaaccttgcattccctttgccaagatccagcatctcct |
28209029 |
T |
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| Q |
217 |
ggtggggctaatcctacatatgcaccttttgctattatgt |
256 |
Q |
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| T |
28209030 |
ggtggggctaatcctacatatgcaccttttgctattatgt |
28209069 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 52048321 - 52048382
Alignment:
| Q |
181 |
accttgcattccctttgccaagatccagcatctcctggtggggctaatcctacatatgcacc |
242 |
Q |
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| T |
52048321 |
accttgtattctctttgccaagatccaacatctcctggggctgctaatcccacataagcacc |
52048382 |
T |
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