View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20105_high_16 (Length: 248)

Name: NF20105_high_16
Description: NF20105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20105_high_16
NF20105_high_16
[»] chr2 (13 HSPs)
chr2 (1-241)||(30870397-30870639)
chr2 (7-241)||(26353800-26354038)
chr2 (7-241)||(8910110-8910354)
chr2 (13-232)||(17353767-17353987)
chr2 (7-118)||(29454111-29454218)
chr2 (7-74)||(19033864-19033931)
chr2 (28-114)||(34214187-34214273)
chr2 (146-233)||(19033698-19033786)
chr2 (11-114)||(21430743-21430846)
chr2 (159-233)||(34213873-34213946)
chr2 (7-114)||(41341924-41342030)
chr2 (154-196)||(21430887-21430929)
chr2 (146-174)||(29454050-29454078)
[»] chr1 (11 HSPs)
chr1 (1-241)||(25878390-25878632)
chr1 (7-233)||(28007150-28007381)
chr1 (11-112)||(30936987-30937088)
chr1 (7-112)||(9343078-9343183)
chr1 (146-241)||(10918081-10918177)
chr1 (146-231)||(45438519-45438604)
chr1 (156-232)||(30937137-30937213)
chr1 (7-49)||(10917959-10918001)
chr1 (78-118)||(10918009-10918049)
chr1 (59-111)||(32991873-32991925)
chr1 (85-125)||(33372642-33372682)
[»] chr8 (13 HSPs)
chr8 (1-241)||(15075540-15075782)
chr8 (7-241)||(4975014-4975250)
chr8 (1-241)||(2751735-2751972)
chr8 (7-241)||(9293402-9293642)
chr8 (7-124)||(20990611-20990728)
chr8 (17-241)||(13322584-13322808)
chr8 (146-241)||(25690412-25690508)
chr8 (13-84)||(25380811-25380882)
chr8 (11-81)||(25689291-25689360)
chr8 (12-111)||(38758847-38758947)
chr8 (146-233)||(25380976-25381068)
chr8 (35-112)||(3687264-3687342)
chr8 (76-118)||(25690338-25690380)
[»] chr3 (10 HSPs)
chr3 (1-241)||(22604066-22604307)
chr3 (7-241)||(11559416-11559658)
chr3 (7-241)||(11568685-11568927)
chr3 (7-240)||(54377960-54378197)
chr3 (7-233)||(50093219-50093446)
chr3 (7-116)||(33757098-33757207)
chr3 (9-113)||(25746042-25746146)
chr3 (7-112)||(54783600-54783704)
chr3 (16-97)||(8414242-8414322)
chr3 (146-226)||(54783486-54783566)
[»] chr4 (7 HSPs)
chr4 (7-231)||(22433879-22434106)
chr4 (7-111)||(19898206-19898310)
chr4 (7-233)||(9591803-9592031)
chr4 (146-231)||(19898346-19898430)
chr4 (7-113)||(56490798-56490906)
chr4 (176-241)||(17028412-17028478)
chr4 (176-233)||(33819527-33819584)
[»] scaffold0092 (1 HSPs)
scaffold0092 (7-228)||(53683-53912)
[»] chr5 (10 HSPs)
chr5 (13-241)||(29069050-29069281)
chr5 (7-241)||(41249771-41250010)
chr5 (146-241)||(26708781-26708877)
chr5 (146-241)||(26978515-26978611)
chr5 (153-241)||(37192942-37193031)
chr5 (39-103)||(26708520-26708584)
chr5 (39-103)||(26978254-26978318)
chr5 (146-233)||(7031266-7031352)
chr5 (12-58)||(37193029-37193075)
chr5 (58-114)||(7031386-7031442)
[»] chr7 (3 HSPs)
chr7 (7-191)||(8543888-8544076)
chr7 (28-233)||(23428714-23428920)
chr7 (16-112)||(42594246-42594341)
[»] chr6 (4 HSPs)
chr6 (7-114)||(292171-292278)
chr6 (7-231)||(11082897-11083124)
chr6 (11-114)||(17371727-17371831)
chr6 (146-232)||(292057-292143)
[»] scaffold0070 (1 HSPs)
scaffold0070 (11-85)||(39895-39969)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30870397 - 30870639
Alignment:
Q  1 ttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30870397 ttagacaaaattttcttttatgaattctttaaccaattatcttagagcatatcgttggcaagaccataaaactagtattataatataaattattcttata 30870496  T
Q  101 tttgttgaaaaaggttgtaattgacc--tgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaa 198  Q
    ||||||||||||||||||||||||||  |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30870497 tttgttgaaaaaggttgtaattgacctatgttggtggtgaaaaaattttaattatggttatattttttatactctattagaaatggacaaatattttaaa 30870596  T
Q  199 caaatcaacattttagggtaattataaatataactagtataat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30870597 caaatcaacattttagggtaattataaatataactagtataat 30870639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 26353800 - 26354038
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||    
T  26353800 aaaatattcttttatgaaatctttaaccaattatcttagagcacatcgttggcaagaccaaaaaactactattataatataaactatttttatatttgtt 26353899  T
Q  107 gaaaaaggttgtaattga-cct--gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaa 202  Q
    ||||||| |||| | |||  ||  ||||||||||         ||| ||||||||||||| ||||||||||  ||||||| |||||||||||| || ||     
T  26353900 gaaaaagattgtgactgatgctacgttggtggtgaaaaaataattatttatggttatattgtttatactctgctagaaatagacaaatatttttaaaaat 26353999  T
Q  203 tcaacattttagggtaattataaatataactagtataat 241  Q
    ||||||||||||| ||||||||||||| ||| |||||||    
T  26354000 tcaacattttaggataattataaatatgacttgtataat 26354038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 8910110 - 8910354
Alignment:
Q  7 aaaattttcttttatga--attctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttg 104  Q
    ||||| |||||||||||  | |||||||||||||||||||||||| |||||||||||||||| | ||||| || ||||||||||| ||||||||||||||    
T  8910110 aaaatattcttttatgatcaatctttaaccaattatcttagagcatatcgttggcaagaccacacaactactactataatataaactattcttatatttg 8910209  T
Q  105 ttgaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattt-----ta 196  Q
    |||||||||||||| | |||| ||  ||||||||||         | ||||||||||||||||||||||| |   ||||||||||||||||||      |    
T  8910210 ttgaaaaaggttgtgaatgacgctacgttggtggtgaaaaaataattattatggttatattttttatactatgcgagaaatggacaaatatttaaaaaaa 8910309  T
Q  197 aacaaatcaacattttagggtaattataaatataactagtataat 241  Q
    || |||| |||||||||||| |||||||||||||||| |||||||    
T  8910310 aaaaaattaacattttagggcaattataaatataacttgtataat 8910354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 17353987 - 17353767
Alignment:
Q  13 ttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaa 112  Q
    |||||||||||| ||||||||||||| ||||||||||  ||||| |||||  |||||||||| ||||||| | |||||||||||||||||||||||||||    
T  17353987 ttcttttatgaaatctttaaccaattttcttagagcatgtcgttagcaaggtcataaaactactattatattctaaattattcttatatttgttgaaaaa 17353888  T
Q  113 gg--ttgtaattgacctgttggtgg-tgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacat 209  Q
     |   ||| ||||||  |||||||| ||        ||||||| ||||||||||||||||||||  ||||||| || |||||| ||| | ||||||||||    
T  17353887 tgctatgtgattgac--gttggtggttgaaaaaaaattaattaaggttatattttttatactctgctagaaatagaaaaatatcttacaaaaatcaacat 17353790  T
Q  210 tttagggtaattataaatataac 232  Q
    ||||| | ||||||||| |||||    
T  17353789 tttagagcaattataaacataac 17353767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 29454218 - 29454111
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||||||||||||||||| ||  ||  |||||||||| |||||||||||| |||||||||||||| ||||||||| ||| ||    
T  29454218 aaaattttcttttatgaaatctttaaccaattatctcag--cat-tcgttggcaataccataaaactactattataatataaactattcttat-tttttt 29454123  T
Q  107 gaaaaaggttgt 118  Q
    ||||||||||||    
T  29454122 gaaaaaggttgt 29454111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 19033931 - 19033864
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaacta 74  Q
    |||||||||||||||||||||||||||||||| ||| |||| | |||||| |||||||||||||||||    
T  19033931 aaaattttcttttatgaattctttaaccaattttctaagagtatatcgttagcaagaccataaaacta 19033864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 34214273 - 34214187
Alignment:
Q  28 tttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaagg 114  Q
    ||||||||||| ||||| | || |||||| |||||||| |||||||| ||||||  | |||| ||||||||||||||||||||||||    
T  34214273 tttaaccaattctcttaaaacatatcgttagcaagaccctaaaactactattatgttctaaactattcttatatttgttgaaaaagg 34214187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 19033786 - 19033698
Alignment:
Q  146 ttaattatggttatattttttatactctattagaaatggacaaatattttaaaca-aatcaacattttagggtaattataaatataact 233  Q
    |||||||||||| |||||||||||||||  | |||||||| |||||||| ||| | |||||||||||||| | ||||||||| ||||||    
T  19033786 ttaattatggttctattttttatactcttctggaaatggagaaatatttaaaaaagaatcaacattttagagcaattataaacataact 19033698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 21430743 - 21430846
Alignment:
Q  11 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaa 110  Q
    |||| ||||| ||| ||||||||||||| ||||||| || |||||| || | |||||||||||| ||||||  |  ||| |||||| |||||||||||||    
T  21430743 tttttttttaggaaatctttaaccaattctcttagaacatatcgttagccaaaccataaaactactattatgttcaaaactattctcatatttgttgaaa 21430842  T
Q  111 aagg 114  Q
    ||||    
T  21430843 aagg 21430846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 34213946 - 34213873
Alignment:
Q  159 tattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaatataact 233  Q
    |||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||  | ||||||||| ||||||    
T  34213946 tattttttatactctactagaagtggaaaaatattttaaa-aaatcaacattttaaagcaattataaacataact 34213873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 41341924 - 41342030
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||||||||||||| ||||| | || |||| |  ||| ||| |||||||  ||| ||| | |||| |||| ||||| |||||    
T  41341924 aaaattttcttttatgaaatctttaaccaattctcttacaacatatcgataacaa-accgtaaaactgctatgatattctaaactattattataattgtt 41342022  T
Q  107 gaaaaagg 114  Q
    ||||||||    
T  41342023 gaaaaagg 41342030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 21430887 - 21430929
Alignment:
Q  154 ggttatattttttatactctattagaaatggacaaatatttta 196  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||    
T  21430887 ggttatattttttatactctactagaaatggaaaaacatttta 21430929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 29454078 - 29454050
Alignment:
Q  146 ttaattatggttatattttttatactcta 174  Q
    |||||||||||||||||||||||||||||    
T  29454078 ttaattatggttatattttttatactcta 29454050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25878632 - 25878390
Alignment:
Q  1 ttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttata 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25878632 ttagataaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactactattataatataaattattcttata 25878533  T
Q  101 tttgttgaaaaaggttgtaattgacc--tgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaa 198  Q
    ||||||||||||||||||||||||||  |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25878532 tttgttgaaaaaggttgtaattgacctatgttggtggtgaaaaaaaattaattatggttatattttttatactctattagaaatggacaaatattttaaa 25878433  T
Q  199 caaatcaacattttagggtaattataaatataactagtataat 241  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  25878432 caaatcaacattttagggtaattataaatataaatggtataat 25878390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 28007381 - 28007150
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||| ||||||||||||| ||||||||||||||||| | |||| |||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||    
T  28007381 aaaaatttcttttatgaaatctttaaccaattatctcaaagcatatcgttggcaagattataaaactactattataatataaactattcttatatttgtt 28007282  T
Q  107 gaaaaaggttgtaattgac-ct--gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaaca-a 201  Q
    ||||||| |||||| |||| ||  ||||||| ||         ||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |    
T  28007281 gaaaaagattgtaactgacactacgttggtgatgaaaaaataattaattatggttatattttttatactctgctagaaatggacaaatattttaaaaaga 28007182  T
Q  202 atcaacattttagggtaattataaatataact 233  Q
    ||||||||||||| | ||||||||||||||||    
T  28007181 atcaacattttagagcaattataaatataact 28007150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 30936987 - 30937088
Alignment:
Q  11 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaa 110  Q
    ||||||||||||||  |||||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  30936987 ttttcttttatgaaacctttaaccaattctcttagagcatatcgttagcaagaccataaaactactattatattttaaattattcttatatttgttgaaa 30937086  T
Q  111 aa 112  Q
    ||    
T  30937087 aa 30937088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 9343078 - 9343183
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||||||||||||| |||||||| | |||||| ||||||| ||||||||| | | ||| | ||||||||| |||||||||||    
T  9343078 aaaattttcttttatgaaatctttaaccaattctcttagagtatatcgttagcaagactataaaactactctcatattctaaattatttttatatttgtt 9343177  T
Q  107 gaaaaa 112  Q
    ||||||    
T  9343178 gaaaaa 9343183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 10918081 - 10918177
Alignment:
Q  146 ttaattatggttatattttttatactctattagaaatggacaaatatttt-aaacaaatcaacattttagggtaattataaatataactagtataat 241  Q
    ||||||| |||||||||||||||||||   ||||||| |||||||||||| ||| ||||||||||||||| | |||||||||||||||| |||||||    
T  10918081 ttaattaaggttatattttttatactccgctagaaattgacaaatatttttaaaaaaatcaacattttagagcaattataaatataacttgtataat 10918177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 45438519 - 45438604
Alignment:
Q  146 ttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaatataa 231  Q
    ||||||||| |||||||||||||||| |  |||||||| | ||||||||| || ||||||| ||||| | ||||||||||| ||||    
T  45438519 ttaattatgtttatattttttatactatgctagaaatgaaaaaatatttttaaaaaatcaatatttttgagtaattataaacataa 45438604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 30937137 - 30937213
Alignment:
Q  156 ttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaatataac 232  Q
    |||||||||||||||||   |||||||||| |||||| ||||  ||||||||||||||| | ||||||||| |||||    
T  30937137 ttatattttttatactccgctagaaatggaaaaatatcttaagaaaatcaacattttagagcaattataaacataac 30937213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 10917959 - 10918001
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagca 49  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||    
T  10917959 aaaaatttcttttatgaaatctttaaccaattatctcagagca 10918001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 10918009 - 10918049
Alignment:
Q  78 ttataatataaattattcttatatttgttgaaaaaggttgt 118  Q
    ||||||||| || ||||||||||||||||||||||| ||||    
T  10918009 ttataatattaactattcttatatttgttgaaaaagcttgt 10918049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 32991873 - 32991925
Alignment:
Q  59 caagaccataaaactagtattataatataaattattcttatatttgttgaaaa 111  Q
    ||||| ||||||| || ||||||| | |||| |||||||||||||||||||||    
T  32991873 caagatcataaaattactattatattctaaactattcttatatttgttgaaaa 32991925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 33372642 - 33372682
Alignment:
Q  85 ataaattattcttatatttgttgaaaaaggttgtaattgac 125  Q
    ||||| |||||||||||||||||||||| ||||| ||||||    
T  33372642 ataaactattcttatatttgttgaaaaaagttgtgattgac 33372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 15075540 - 15075782
Alignment:
Q  1 ttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttata 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15075540 ttagataaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactactattataatataaattattcttata 15075639  T
Q  101 tttgttgaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaa 197  Q
    ||||||||||||||||||||||||| ||  ||||||||||        |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15075640 tttgttgaaaaaggttgtaattgacactacgttggtggtg-aaaaaaattaattatggttatattttttatactctgttagaaatggacaaatattttaa 15075738  T
Q  198 acaaatcaacattttagggtaattataaatataactagtataat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15075739 acaaatcaacattttagggtaattataaatataactagtataat 15075782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 4975250 - 4975014
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4975250 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactactattataatataaattattcttatatttgtt 4975151  T
Q  107 gaaaaaggttgtaattgacc--tgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatc 204  Q
    |||||| |||||||||||||  |||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4975150 gaaaaaagttgtaattgacctatgttggtggtgaaaaaaaattaattatggttatattttttataccctattagaaatggacaaatattttaaacaaatc 4975051  T
Q  205 aacattttagggtaattataaatataactagtataat 241  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  4975050 aacattttaggataattataaatataactggtataat 4975014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2751735 - 2751972
Alignment:
Q  1 ttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttata 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2751735 ttagataaaattttcttttatgaattctttaaccaattatcttagagcatatcgttggcaagaccataaaactattattataatataaattattcttata 2751834  T
Q  101 tttgttgaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaa 197  Q
    |||||||||||||||||| | |||| ||  ||||||||||          |||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  2751835 tttgttgaaaaaggttgtgactgacgctacgttggtggtgaaaa------aattatggttatattttttatactatgttaaaaatggacaaatattttaa 2751928  T
Q  198 acaaatcaacattttagggtaattataaatataactagtataat 241  Q
    ||| |||||||||||||||||| ||||||||||||| |||||||    
T  2751929 acatatcaacattttagggtaaatataaatataacttgtataat 2751972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 9293642 - 9293402
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||| ||||||||||||||||  || |||||||||||||||||||||||| ||||||||||||||  |||||||| ||| ||    
T  9293642 aaaattttcttttatgaaatctgtaaccaattatcttag--catatcgttggcaagaccataaaactactattataatataaaccattcttat-tttttt 9293546  T
Q  107 gaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattt------taa 197  Q
    |||||||||||| | | || ||  ||||||||||        ||||||||||||||||||||||||||||  |||||| ||| ||||||||       ||    
T  9293545 gaaaaaggttgtgactaacgctacgttggtggtgaaaaataattaattatggttatattttttatactctgctagaaacggataaatatttaaaaaaaaa 9293446  T
Q  198 acaaatcaacattttagggtaattataaatataactagtataat 241  Q
    | ||||||||||||||||| ||||||||||||| || |||||||    
T  9293445 aaaaatcaacattttagggcaattataaatatagcttgtataat 9293402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 20990728 - 20990611
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||||||||||| ||||| | |||| || ||||||||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  20990728 aaaattttcttttatgaaatctttaaccaactatctcatagcatattgttggcaagaccatacaactactattataatataaaatattattatatttgtt 20990629  T
Q  107 gaaaaaggttgtaattga 124  Q
    |||||||||||| |||||    
T  20990628 gaaaaaggttgtgattga 20990611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 13322584 - 13322808
Alignment:
Q  17 tttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaagg-- 114  Q
    ||||| || ||||||||||||| |||||||||| |||||| ||||||| ||||||||| ||||||  | |||||||||||||||||||||||||||||      
T  13322584 tttataaaatctttaaccaattctcttagagcatatcgttagcaagactataaaactattattat-ttctaaattattcttatatttgttgaaaaaggct 13322682  T
Q  115 ttgtaattgacctgttggtggt--gnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacatttt 212  Q
    |||| ||||||  |||||||||           ||||||||||||||||||||||||||||  ||||||| || |||||| || || |||||||||||||    
T  13322683 ttgtcattgac--gttggtggttgaaaaaataattaattatggttatattttttatactctgctagaaat-gaaaaatatctttaaaaaatcaacatttt 13322779  T
Q  213 agggtaattataaatataactagtataat 241  Q
    || | ||||||||| ||||||| ||||||    
T  13322780 agagcaattataaacataactaatataat 13322808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 25690412 - 25690508
Alignment:
Q  146 ttaattatggttatatttt-ttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaatataactagtataat 241  Q
    ||||||||||||||||||| ||||||||   |||||||| |||||||||| ||| | |||||||||||| || |||||||||||||||| |||||||    
T  25690412 ttaattatggttatatttttttatactcggctagaaatgcacaaatatttaaaaaatatcaacattttatggcaattataaatataacttgtataat 25690508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 25380811 - 25380882
Alignment:
Q  13 ttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataat 84  Q
    |||||||||||| |||||||||||||||||||||| | |||||| |||||||||| |||||| |||||||||    
T  25380811 ttcttttatgaaatctttaaccaattatcttagagtatatcgttagcaagaccatcaaactactattataat 25380882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 25689291 - 25689360
Alignment:
Q  11 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattat 81  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||    
T  25689291 ttttcttttatgaaatctttaaccaattatcttagagcatatcgttagcaaga-cataaaactactattat 25689360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 38758847 - 38758947
Alignment:
Q  12 tttcttttatgaattcttt-aaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaa 110  Q
    ||||||||| ||| ||||| |||||| | ||||||| || |||||| | ||||||||||||||| ||||||| | || ||||||||||||||||||||||    
T  38758847 tttcttttaggaaatcttttaaccaaatctcttagatcatatcgttagtaagaccataaaactactattatattctagattattcttatatttgttgaaa 38758946  T
Q  111 a 111  Q
    |    
T  38758947 a 38758947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 25380976 - 25381068
Alignment:
Q  146 ttaattatggttatattt-tttatactctattagaaatggacaaata----ttttaaacaaatcaacattttagggtaattataaatataact 233  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||    ||||  | |||||||||||||| || ||||||||||||||||    
T  25380976 ttaattatggttatatttctttatactctgctagaaatggacaaatattttttttttaaaaatcaacattttatggcaattataaatataact 25381068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 3687342 - 3687264
Alignment:
Q  35 aattatcttagagcacatcgttggcaa-gaccataaaactagtattataatataaattattcttatatttgttgaaaaa 112  Q
    ||||||||||||||| || ||| |||| ||  ||||||||| ||||||| | |||||||||||||||||||||||||||    
T  3687342 aattatcttagagcatatagttagcaaagattataaaactactattatattctaaattattcttatatttgttgaaaaa 3687264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 25690338 - 25690380
Alignment:
Q  76 tattataatataaattattcttatatttgttgaaaaaggttgt 118  Q
    ||||||||| |||| |||| |||||||||||||||||||||||    
T  25690338 tattataatctaaactattattatatttgttgaaaaaggttgt 25690380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 22604307 - 22604066
Alignment:
Q  1 ttagacaaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttata 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22604307 ttagataaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactactattataatataaattattcttata 22604208  T
Q  101 tttgttgaaaaaggttgtaattgacc--tgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaa 198  Q
    ||||||||||||||||||||||||||  |||||| ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22604207 tttgttgaaaaaggttgtaattgacctatgttgggggtg-aaaaaaattaattatggttatattttttatactctattagaaatggacaaatattttaaa 22604109  T
Q  199 caaatcaacattttagggtaattataaatataactagtataat 241  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  22604108 caaatcaacattttagggtaattataaatataattggtataat 22604066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 11559658 - 11559416
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  11559658 aaaattttcttttatgaaatctttaaccaattatctcagagcatatcgttggcaagaccataaaactactattatggtataaattattcttatatttgtt 11559559  T
Q  107 gaaaaaggttgtaattga-cct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattt-----taaa 198  Q
    |||||||||||| | |||  ||  ||||||||||         | | ||||||| ||||||||||| |||| |||||||||||||||||||      |||    
T  11559558 gaaaaaggttgtgactgatgctacgttggtggtgaaaaaataattaatatggttgtattttttatagtctactagaaatggacaaatatttaaaaaaaaa 11559459  T
Q  199 caaatcaacattttagggtaattataaatataactagtataat 241  Q
     ||||||||||||||||  |||||||||||||||| |||||||    
T  11559458 aaaatcaacattttaggacaattataaatataacttgtataat 11559416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 11568927 - 11568685
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  11568927 aaaattttcttttatgaaatctttaaccaattatctcagagcatatcgttggcaagaccataaaactactattatggtataaattattcttatatttgtt 11568828  T
Q  107 gaaaaaggttgtaattga-cct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattt-----taaa 198  Q
    |||||||||||| | |||  ||  ||||||||||         | | ||||||| ||||||||||| |||| |||||||||||||||||||      |||    
T  11568827 gaaaaaggttgtgactgatgctacgttggtggtgaaaaaataattaatatggttgtattttttatagtctactagaaatggacaaatatttaaaaaaaaa 11568728  T
Q  199 caaatcaacattttagggtaattataaatataactagtataat 241  Q
     ||||||||||||||||  |||||||||||||||| |||||||    
T  11568727 aaaatcaacattttaggacaattataaatataacttgtataat 11568685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 54378197 - 54377960
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||| ||| ||||||||||||||||| | |||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  54378197 aaaattttcttttacgaaatctttaaccaattatctcaaagcatatcgttggcaagaccatacaactactattataatataaactattcttatatttgtt 54378098  T
Q  107 -gaaaaaggttgtaattgac-ct--gttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaa 202  Q
      ||||| ||||| |||||| ||  |||||||||         |||||||||||||||||||||||||||   ||||| | |||||||||||| || |||    
T  54378097 aaaaaaatgttgtgattgacgctacgttggtggtcaaaaataattaattatggttatattttttatactccgctagaacttgacaaatatttttaaaaaa 54377998  T
Q  203 tcaacattttagggtaattataaatataactagtataa 240  Q
    |||||||||||||| ||||||| |||||||| ||||||    
T  54377997 tcaacattttagggcaattatatatataacttgtataa 54377960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 50093446 - 50093219
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaac---tagtattataatataaattattcttatattt 103  Q
    |||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||   || |||||| ||||||| |||||||||||||    
T  50093446 aaaaatttcttttatgaaatctttaaccaattatctcagagcatatcgttggcaagaccataaaactattactattattatataaactattcttatattt 50093347  T
Q  104 gttgaaaaaggttgtaattgacctgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaata-ttttaaacaaa 202  Q
    ||||||||||||||| | | ||  ||||||||||        |||||||| ||||||||||| ||||| | ||||||||||||||||| |||| || |||    
T  50093346 gttgaaaaaggttgtgact-ac--gttggtggtgaaaaataattaattatagttatatttttaatactatgttagaaatggacaaatattttttaaaaaa 50093250  T
Q  203 tcaacattttagggtaattataaatataact 233  Q
    |||||||||||||  |||| ||| |||||||    
T  50093249 tcaacattttaggacaattgtaagtataact 50093219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 33757207 - 33757098
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    ||||||||||||||||||||| |||||||||| |||||||| | || ||| |||||| |||||||||| ||||||| | |||| |||| |||||||||||    
T  33757207 aaaattttcttttatgaattcattaaccaattctcttagagtatattgttagcaagatcataaaactactattatattctaaactatttttatatttgtt 33757108  T
Q  107 gaaaaaggtt 116  Q
     |||||||||    
T  33757107 aaaaaaggtt 33757098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 25746042 - 25746146
Alignment:
Q  9 aattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttga 108  Q
    ||||| |||||||||| ||||||| ||||| ||||||||   || ||| ||||||||||||||||| ||||||| | |||| ||||||||||||||||||    
T  25746042 aatttccttttatgaaatctttaatcaattctcttagagattattgttagcaagaccataaaactactattatattttaaactattcttatatttgttga 25746141  T
Q  109 aaaag 113  Q
    |||||    
T  25746142 aaaag 25746146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 54783704 - 54783600
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| | ||||||||||| ||||||| ||  ||||| ||||||||||||||||| |||||| || | || |||| |||||||||||    
T  54783704 aaaattttcttttatgaaatatttaaccaattctcttagaacatgtcgttagcaagaccataaaactactattat-attttaactatttttatatttgtt 54783606  T
Q  107 gaaaaa 112  Q
    ||||||    
T  54783605 gaaaaa 54783600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 8414322 - 8414242
Alignment:
Q  16 ttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattctt 97  Q
    ||||||||| | ||||||||||| |||||||||| |||||| |||| ||||| |||||| ||||||| | |||| |||||||    
T  8414322 ttttatgaaatatttaaccaattctcttagagcatatcgttagcaataccat-aaactattattatattctaaactattctt 8414242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 54783566 - 54783486
Alignment:
Q  146 ttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaa 226  Q
    |||||||||||| ||| ||||||||||    ||||||||| ||||||||  || ||||||||||||||| | |||||||||    
T  54783566 ttaattatggttgtatgttttatactcggcaagaaatggaaaaatatttataaaaaatcaacattttagagcaattataaa 54783486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 22433879 - 22434106
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  22433879 aaaattttcttttatgaaatctttaaccaattatcttcgagcatatcgttggcaagaccataaaactaccattataatataaattattgttatatttgtt 22433978  T
Q  107 gaaaaaggttgtaattgacct--gttggtggt-gnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaat 203  Q
    |||||||||||| | |   ||  |||||||||          ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22433979 gaaaaaggttgtgactacgctacgttggtggtaaaaaaataattaattatggttacattttttatactctattagaaatggacaaatattttaaacaaat 22434078  T
Q  204 caacattttagggtaattataaatataa 231  Q
    ||||||||||||||||||||||||||||    
T  22434079 caacattttagggtaattataaatataa 22434106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 19898206 - 19898310
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||||||||||||| | |||||||| |||||| ||||||||||||||||| ||||||  | |||| ||||| ||||||||||    
T  19898206 aaaattttcttttatgaaatctttaaccaattttattagagcatatcgttagcaagaccataaaactactattatgctctaaactattcctatatttgtt 19898305  T
Q  107 gaaaa 111  Q
    |||||    
T  19898306 gaaaa 19898310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 9591803 - 9592031
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattctt-atatttgt 105  Q
    |||||||||||||||||  ||||||||||||| |||||||| | || ||| |||||| |||||||||| ||||||| | |||| |||| || |||||| |    
T  9591803 aaaattttcttttatgatatctttaaccaattctcttagagaatattgttagcaagatcataaaactactattatattctaaactattttttatatttat 9591902  T
Q  106 tgaaaaaggtt--gtaattgacctgttggtggtgnnnnnnnn--ttaattatggttatattttttatactctattagaaatggacaaatattttaaacaa 201  Q
    ||||||| |||  || |||||  ||||||||||           ||||||||||||||||||||| ||||||  |||||||||| |||||||||||| ||    
T  9591903 tgaaaaatgttatgtgattga--tgttggtggttgaaaaaataattaattatggttatatttttt-tactctgctagaaatggaaaaatattttaaaaaa 9591999  T
Q  202 atcaacattttagggtaattataaatataact 233  Q
     |||||||||||  | ||||||||||||||||    
T  9592000 ctcaacattttatagcaattataaatataact 9592031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 19898346 - 19898430
Alignment:
Q  146 ttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaatataa 231  Q
    ||||||| |||||||||||| | ||||||||| ||||||| ||||||||| || ||||||||||||||  | ||||||||| ||||    
T  19898346 ttaattaaggttatattttt-acactctattaaaaatggaaaaatatttttaaaaaatcaacattttaaagcaattataaacataa 19898430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 56490906 - 56490798
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatc--gttggcaagaccataaaactagtattataatataaattattcttatatttg 104  Q
    |||||||||||||||||| ||||||| ||||| ||||| ||||  ||  ||| | |||| ||||| | |  ||||||| |||| ||||||||||||||||    
T  56490906 aaaattttcttttatgaaatctttaatcaattctcttatagcatctctagttaggaagatcataacatttctattatattatatattattcttatatttg 56490807  T
Q  105 ttgaaaaag 113  Q
    |||||||||    
T  56490806 ttgaaaaag 56490798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 17028412 - 17028478
Alignment:
Q  176 tagaaatggacaaatatttta-aacaaatcaacattttagggtaattataaatataactagtataat 241  Q
    ||||||| ||||||||||||  || |||||||||||||| || |||||||||||||| | |||||||    
T  17028412 tagaaattgacaaatattttttaaaaaatcaacattttatggcaattataaatataaattgtataat 17028478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 33819527 - 33819584
Alignment:
Q  176 tagaaatggacaaatattttaaacaaatcaacattttagggtaattataaatataact 233  Q
    |||||||||| ||||||||||   ||||||||||||||| | ||||||||| ||||||    
T  33819527 tagaaatggaaaaatattttactaaaatcaacattttagagcaattataaacataact 33819584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 53912 - 53683
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||| ||||  |||||||| |||||||||||| |||||||||    
T  53912 aaaattttcttttatgaaatctttaaccaattatctcagagcatattgttggcaagaccatacaacttctattataacataaattattctaatatttgtt 53813  T
Q  107 gaaaaaggttgtaattgac-ct--gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatatttt----aaa 198  Q
    |||||||||||| | |||| ||  ||||||||||         ||||||||| |||||||||||||||| |  ||||||||||||||||||||    |||    
T  53812 gaaaaaggttgtgactgacgctacgttggtggtgaaaaaataattaattatgattatattttttatactttgctagaaatggacaaatattttttaaaaa 53713  T
Q  199 caaatcaacattttagggtaattataaata 228  Q
     ||||||||||| ||||| |||||||||||    
T  53712 aaaatcaacattgtagggcaattataaata 53683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 29069281 - 29069050
Alignment:
Q  13 ttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaa 112  Q
    |||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  29069281 ttcttttatgaaatctttaaccaattatctcatagcatatcgttggcaagaccataaaactactattattatataaactattcttatatttgttgaaaaa 29069182  T
Q  113 ggttgtaattgacct---gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaaca 208  Q
    |||||| | |||| |   ||||||||||         |||||||| ||||||||||||||||  |  |||||||||||||||||||| || |||  |  |    
T  29069181 ggttgtgactgacgttacgttggtggtgaaaaaataattaattatagttatattttttataccatgctagaaatggacaaatatttttaa-aaaaaatta 29069083  T
Q  209 ttttagggtaattataaatataactagtataat 241  Q
    |||||||| |||||||| ||||||| |||||||    
T  29069082 ttttagggcaattataagtataacttgtataat 29069050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 41249771 - 41250010
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||| ||| ||||||||||||||| | |||||| || ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  41249771 aaaattttcttttaagaaatctttaaccaattatatcagagcatattgttggcaagaccatacaactactattataatataaactattcttatatttgtt 41249870  T
Q  107 gaaaaaggttgtaattgac---ctgttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaata--ttttaaaca 200  Q
    |||||| ||||| | ||||    |||| ||||||         ||||||||||||||||||||||||||||  |||||||||| |||||  ||||  | |    
T  41249871 gaaaaa-gttgtgactgacgctatgttagtggtgaaaaaataattaattatggttatattttttatactctgctagaaatggataaatattttttttaaa 41249969  T
Q  201 aatcaacattttagggtaattataaatataactagtataat 241  Q
    |||||||| |||| |  |||||||||||||||| |||||||    
T  41249970 aatcaacaatttaagacaattataaatataacttgtataat 41250010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 26708781 - 26708877
Alignment:
Q  146 ttaattatggttatattttttatactctattagaaatggacaaatatttt-aaacaaatcaacattttagggtaattataaatataactagtataat 241  Q
    ||||||||| ||||||||||||| ||||  |||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||    
T  26708781 ttaattatgattatattttttattctctgctagaaatggataaatatttttaaaaaaatcaacattttagggcaattataaatataacttgtataat 26708877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 26978515 - 26978611
Alignment:
Q  146 ttaattatggttatattttttatactctattagaaatggacaaatatttt-aaacaaatcaacattttagggtaattataaatataactagtataat 241  Q
    ||||||||| ||||||||||||| ||||  |||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||    
T  26978515 ttaattatgattatattttttattctctgctagaaatggataaatatttttaaaaaaatcaacattttagggcaattataaatataacttgtataat 26978611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 37193031 - 37192942
Alignment:
Q  153 tggttatattttttatactctattagaaatggacaaata-ttttaaacaaatcaacattttagggtaattataaatataactagtataat 241  Q
    |||||||||||||||||||||  |||||||||||||||| ||||  | ||||||||||||||||  |||||||||||||||| |||||||    
T  37193031 tggttatattttttatactctgctagaaatggacaaatatttttttaaaaatcaacattttaggacaattataaatataacttgtataat 37192942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 26708520 - 26708584
Alignment:
Q  39 atcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatattt 103  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  26708520 atcttagagcatatcgttggcaagaccataaaactactattataatataaactatttttatattt 26708584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 26978254 - 26978318
Alignment:
Q  39 atcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatattt 103  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  26978254 atcttagagcatatcgttggcaagaccataaaactactattataatataaactatttttatattt 26978318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 7031352 - 7031266
Alignment:
Q  146 ttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattataaatataact 233  Q
    ||||||| ||||||||||||||||||||| |||||||| | |||| |||| || ||||||||| ||||| | ||||| ||||||||||    
T  7031352 ttaattaaggttatattttttatactctactagaaatgaaaaaatgtttt-aagaaatcaacagtttagagcaattacaaatataact 7031266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 37193075 - 37193029
Alignment:
Q  12 tttcttttatgaattctttaaccaattatcttagagcacatcgttgg 58  Q
    ||||||||||||| ||||||||||||||||| | |||| ||||||||    
T  37193075 tttcttttatgaaatctttaaccaattatctcatagcatatcgttgg 37193029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 7031442 - 7031386
Alignment:
Q  58 gcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaagg 114  Q
    ||||||||||||||||| |||| |  | |||| |||||| |||||||||||||||||    
T  7031442 gcaagaccataaaactactattttgttctaaactattctaatatttgttgaaaaagg 7031386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 8543888 - 8544076
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  8543888 aaaattttcttttatgaaatctttaatcaattatctcagagcatatcgttggcaagaccatacaactactattataatataaactattcttatatttgtt 8543987  T
Q  107 gaaaaaggttgtaattgac-ct--gttggtggtg-nnnnnnnnttaattatggttatattttttatactctattagaaatggacaaata 191  Q
    |||||||||||| | |||| ||  |||| |||||         || |||||||||||||||||||||||||  ||||||||||||||||    
T  8543988 gaaaaaggttgtgactgacgctacgttgatggtgaaaaaataattgattatggttatattttttatactctgctagaaatggacaaata 8544076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 23428920 - 23428714
Alignment:
Q  28 tttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaaggtt--gtaattgac 125  Q
    ||||||||||||||||||| || |||||| ||||||||||||||||| |||| |  | |||| |||||| ||||||||||||||||| |   | ||||||    
T  23428920 tttaaccaattatcttagaacatatcgttagcaagaccataaaactactattttgttctaaactattctaatatttgttgaaaaaggctcaatgattgac 23428821  T
Q  126 -ctgttggtggtgnnnnnnnnttaattatggttatattttttatactctattagaaatggacaaatattttaaacaaatcaacattttagggtaattata 224  Q
      ||||||| |          ||| ||| ||||||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||  | |||||||    
T  23428820 gttgttggttg-aaaaaataattacttaaggttatattttttatactctactagaaatggaaaaatatttt-aagaaatcaacattttaaagcaattata 23428723  T
Q  225 aatataact 233  Q
    || ||||||    
T  23428722 aacataact 23428714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 42594341 - 42594246
Alignment:
Q  16 ttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgttgaaaaa 112  Q
    |||||||||| || ||||||||| |||||||||| ||| || | ||| ||||||||||| ||||||| | ||||||||||| ||||||||| |||||    
T  42594341 ttttatgaat-ctataaccaattctcttagagcatatcattagtaaggccataaaactactattatattttaaattattctcatatttgttaaaaaa 42594246  T

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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 292278 - 292171
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||| ||| ||||||||| ||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  292278 aaaagtttattttatgaaatctttaaacaattctcttagagcatatcgttagcaagaccataaaactactattatattataaattattcttatatttgtt 292179  T
Q  107 gaaaaagg 114  Q
    ||||||||    
T  292178 gaaaaagg 292171  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 11083124 - 11082897
Alignment:
Q  7 aaaattttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatataaattattcttatatttgtt 106  Q
    |||| ||||||||||||| |||||||||| || |||||||||   |||||   ||||||||||||||| ||||||| | |||||||||||||||||||||    
T  11083124 aaaaatttcttttatgaaatctttaaccagttttcttagagcgtgtcgttaataagaccataaaactactattatattctaaattattcttatatttgtt 11083025  T
Q  107 gaaaaagg--ttgtaattgacctgttggtggt--gnnnnnnnnttaattatggttata-ttttttatactctattagaaatggacaaatattttaaacaa 201  Q
    ||||||||   ||| ||||||  |||| ||||           ||||||| ||||||| ||||||||||||| |||||||| || |||||| ||||| ||    
T  11083024 gaaaaaggctatgtgattgac--gttgatggttgaaaaattaattaattagggttatatttttttatactctgttagaaatagaaaaatatcttaaaaaa 11082927  T
Q  202 atcaacattttagggtaattataaatataa 231  Q
    ||||| ||||||| | ||||||||||||||    
T  11082926 atcaagattttagagcaattataaatataa 11082897  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 17371727 - 17371831
Alignment:
Q  11 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataatat-aaattattcttatatttgttgaa 109  Q
    |||||||||||| | ||||||||||||| |||||||||| |||||| ||||||||||||||| | ||||||| | | ||||| |||||||||||||| ||    
T  17371727 ttttcttttatgcaatctttaaccaattctcttagagcatatcgttagcaagaccataaaacaactattatattctaaaattgttcttatatttgttaaa 17371826  T
Q  110 aaagg 114  Q
    |||||    
T  17371827 aaagg 17371831  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 292143 - 292057
Alignment:
Q  146 ttaattatggttatattttttatactctattagaaatggacaaatat-tttaaacaaatcaacattttagggtaattataaatataac 232  Q
    ||||||||||||||||||||||||||||  ||||||  || |||||| ||| || |||| |||||||||| | ||||||||| |||||    
T  292143 ttaattatggttatattttttatactctgctagaaacagaaaaatatcttttaaaaaat-aacattttagagcaattataaacataac 292057  T

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Target: scaffold0070 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 39969 - 39895
Alignment:
Q  11 ttttcttttatgaattctttaaccaattatcttagagcacatcgttggcaagaccataaaactagtattataata 85  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  39969 ttttcttatatgaaatctttaaccaattatcttagagcatatcgttagcaagaccataaaactactattataata 39895  T

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